cgmartini.nl
HomeMartini Force Field Portal
http://www.cgmartini.nl/
Martini Force Field Portal
http://www.cgmartini.nl/
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Martini Force Field Portal
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Tutorials
http://www.cgmartini.nl/index.php/tutorials
Coarse Grain Forcefield for Biomolecules. Jump to main navigation and login. Are you wondering where to start? Try our Martini flowchart. These tutorials were originally written for the MARTINI winterschool 2008 in Helsinki by Lars Schäfer, Andrzej Rzepiela, and Martti Louhivuori, s. Ubsequently updated by Clement Arnarez, Alex de Vries and Djurre de Jong for the CECAM Coarse grain workshop 2011 and further updated by. Clement Arnarez, Helgi Ingólfsson, Manuel Nuno Melo and Jaakko Uusitalo.
BACKWARD
http://www.cgmartini.nl/index.php/back
Coarse Grain Forcefield for Biomolecules. Jump to main navigation and login. Last Updated: Saturday, 19 March 2016 12:08. Backward is a tool to convert a coarse-grained system to united-atom or all-atom resolution. The mapping is done using a library of mapping definitions, which encode the geometric reconstruction. When using this method, please cite:. Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models.
Glycolipids
http://www.cgmartini.nl/index.php/glipids
Coarse Grain Forcefield for Biomolecules. Jump to main navigation and login. Last Updated: Thursday, 12 June 2014 15:13. Including all common PC and PEs, with hexanoyl, lauroyl, palmitoyl, oleoyl, stearoyl, linoleyl, and arachidonoyl tails. Trial topologies for a sphingolipid, ceramide, and for PG and PS lipids are also included. Lipids with two heads (bolalipids) are available as well. Martini v2.0 lipids.itp. And here you can find the glycolipids, including MGDG, DGDG, PI, PIPs, GM1 and more .
Improved gangliosides
http://www.cgmartini.nl/index.php/gms
Coarse Grain Forcefield for Biomolecules. Jump to main navigation and login. Last Updated: Friday, 03 February 2017 13:56. Shaken, not stirred." - James Bond.
Ceramide parameters
http://www.cgmartini.nl/index.php/ceramide-parameters
Coarse Grain Forcefield for Biomolecules. Jump to main navigation and login. Last Updated: Thursday, 12 June 2014 15:13. Including all common PC and PEs, with hexanoyl, lauroyl, palmitoyl, oleoyl, stearoyl, linoleyl, and arachidonoyl tails. Trial topologies for a sphingolipid, ceramide, and for PG and PS lipids are also included. Lipids with two heads (bolalipids) are available as well. Martini v2.0 lipids.itp. And here you can find the glycolipids, including MGDG, DGDG, PI, PIPs, GM1 and more .
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Coarse Grain Force Field for Biomolecular Simulations. Jump to main navigation and login. Example mdp Gromacs 5.x. Example input Gromacs 4.x. Membrane insertion Tc toxin. Protein induced membrane stifness. Anestetic binding sites ion channel. Lipid extraction by nanoparticles. GM mediated protein clustering. Surface wetting by vesicles. E-field induced bilayer curvature. WALP effects lipid domains. Polyelectrolytes PSS and PDAMA. Osmolyte effect amyloid aggregation. Receptor proteins plasma membrane.
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