chip-enrich.med.umich.edu

ChIP-Enrich: Gene set enrichment testing for ChIP-seq data

ChIP-Enrich: Gene set enrichment testing for ChIP-seq data. ChIP-Enrich tests ChIP-seq peak data for enrichment of biological pathways, Gene Ontology terms, and other types of gene sets. The pre-defined gene sets are the same as used in LRpath. And can be browsed here. Output includes summary plots, peak to gene assignments,and enrichment (and depletion) results including odds ratio, p-value, and FDR for each gene set. ENCODE enrichment testing results can be accessed here. Number of peaks a gene must ha...

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ChIP-Enrich: Gene set enrichment testing for ChIP-seq data | chip-enrich.med.umich.edu Reviews

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ChIP-Enrich: Gene set enrichment testing for ChIP-seq data. ChIP-Enrich tests ChIP-seq peak data for enrichment of biological pathways, Gene Ontology terms, and other types of gene sets. The pre-defined gene sets are the same as used in LRpath. And can be browsed here. Output includes summary plots, peak to gene assignments,and enrichment (and depletion) results including odds ratio, p-value, and FDR for each gene set. ENCODE enrichment testing results can be accessed here. Number of peaks a gene must ha...

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ChIP-Enrich: Gene set enrichment testing for ChIP-seq data | chip-enrich.med.umich.edu Reviews

https://chip-enrich.med.umich.edu

ChIP-Enrich: Gene set enrichment testing for ChIP-seq data. ChIP-Enrich tests ChIP-seq peak data for enrichment of biological pathways, Gene Ontology terms, and other types of gene sets. The pre-defined gene sets are the same as used in LRpath. And can be browsed here. Output includes summary plots, peak to gene assignments,and enrichment (and depletion) results including odds ratio, p-value, and FDR for each gene set. ENCODE enrichment testing results can be accessed here. Number of peaks a gene must ha...

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ChIP-Enrich: Gene set enrichment testing for ChIP-seq data

http://chip-enrich.med.umich.edu/summaryReport.jsp

ChIP-Enrich: Gene set enrichment testing for ChIP-seq data. Here we provide ChIP-Enrich results, as well as supporting peak annotations and summary plots, for XXX ENCODE TRFs. For each dataset, we provide ChIP-Enrich and Fisher's exact test results using 4 different approaches to assigning peaks to genes (description here). Click "Download Zip File" to download the entire set of results, or click on any individual link to download the specified file. Change log for this page can be accessed here.

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ChIP-Enrich: Gene set enrichment testing for ChIP-seq data

http://chip-enrich.med.umich.edu/chipMain.jsp

ChIP-Enrich: Gene set enrichment testing for ChIP-seq data. ChIP-Enrich tests ChIP-seq peak data for enrichment of biological pathways, Gene Ontology terms, and other types of gene sets. The pre-defined gene sets are the same as used in LRpath. And can be browsed here. Output includes summary plots, peak to gene assignments,and enrichment (and depletion) results including odds ratio, p-value, and FDR for each gene set. ENCODE enrichment testing results can be accessed here. Number of peaks a gene must ha...

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sartorlab.ccmb.med.umich.edu

ChIP-Enrich | The Sartor Lab

http://sartorlab.ccmb.med.umich.edu/chip-enrich

Skip to main content. Department of Computational Medicine and Bioinformatics. ChIP-Enrich: Gene Set Enrichment Testing for ChIP-Seq Data. R package and web site can test for gene-set enrichment using 17 different annotation databases (such as KEGG pathways and GO biological processes), accepts either a BED file or R object as input. Creates summary plots and files describing peak to gene assignments and enrichment results. Web-interface version of ChIP-Enrich:. R package (new multi-core version):. 1 RP ...

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ChIP-Enrich: Gene set enrichment testing for ChIP-seq data

ChIP-Enrich: Gene set enrichment testing for ChIP-seq data. ChIP-Enrich tests ChIP-seq peak data for enrichment of biological pathways, Gene Ontology terms, and other types of gene sets. The pre-defined gene sets are the same as used in LRpath. And can be browsed here. Output includes summary plots, peak to gene assignments,and enrichment (and depletion) results including odds ratio, p-value, and FDR for each gene set. ENCODE enrichment testing results can be accessed here. Number of peaks a gene must ha...

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