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CLARITY Resources

RNA detection in CLARITY. RNA detection in CLARITY. Scientific American Special Report 2016. CLARITY News and Techniques. Comparing Tissue Transparency Methods for Intact Analyses. From Communication in Neural Circuits: Tools, Opportunities, and Challenges. Lerner TN, Ye L, and K Deisseroth. Cell. Transparent brains reveal effects of cocaine and fear (Nature). Microscopy: seeing through tissue (Nature Methods). CLARITY-optimized light-sheet microscopy (COLM). D-lab Extended Workshop Information. Lerner T...

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RNA detection in CLARITY. RNA detection in CLARITY. Scientific American Special Report 2016. CLARITY News and Techniques. Comparing Tissue Transparency Methods for Intact Analyses. From Communication in Neural Circuits: Tools, Opportunities, and Challenges. Lerner TN, Ye L, and K Deisseroth. Cell. Transparent brains reveal effects of cocaine and fear (Nature). Microscopy: seeing through tissue (Nature Methods). CLARITY-optimized light-sheet microscopy (COLM). D-lab Extended Workshop Information. Lerner T...
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4 automated clarity analysis
5 function
6 fiber photometry
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CLARITY Resources | clarityresourcecenter.com Reviews

https://clarityresourcecenter.com

RNA detection in CLARITY. RNA detection in CLARITY. Scientific American Special Report 2016. CLARITY News and Techniques. Comparing Tissue Transparency Methods for Intact Analyses. From Communication in Neural Circuits: Tools, Opportunities, and Challenges. Lerner TN, Ye L, and K Deisseroth. Cell. Transparent brains reveal effects of cocaine and fear (Nature). Microscopy: seeing through tissue (Nature Methods). CLARITY-optimized light-sheet microscopy (COLM). D-lab Extended Workshop Information. Lerner T...

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1

COLM Resources

http://clarityresourcecenter.com/COLM.html

RNA detection in CLARITY. RNA detection in CLARITY. SPED Light Sheet Microscopy: Fast Mapping of Biological System Structure and Function. Tomer R, Lovett-Barron M, Kauvar I, Andalman A, Burns VM, Sankaran S, Grosenick L, Broxton M, Yang S, and K Deisseroth. Cell. Intact-brain analyses reveal distinct information carried by SNc dopamine subcircuits. Lerner TN, Shilyansky C, Davidson TJ, Evans KE, Beier KT, Zalocusky KA, Crow AK, Malenka RC, Luo L, Tomer R, and K Deisseroth. Cell.

2

Fiber Photometry Resources

http://clarityresourcecenter.com/fiberphotometry.html

RNA detection in CLARITY. RNA detection in CLARITY. Fiber Photometry for imaging long-range projections. Hypothalamic control of male aggression-seeking behavior. Falkner AL, Grosenick L, Davidson TJ, Deisseroth K, and D Lin. Nature Neuroscience. Advanced Online (2016). Supplementary Information. Intact-brain analyses reveal distinct information carried by SNc dopamine subcircuits. Natural Neural Projection Dynamics Underlying Social Behavior. 157:1535–1551 (June 2014). *equal contributors.

3

CLARITY Resources

http://clarityresourcecenter.com/CLARITY.html

RNA detection in CLARITY. RNA detection in CLARITY. CLARITY News and Techniques. Comparing Tissue Transparency Methods for Intact Analyses. From Communication in Neural Circuits: Tools, Opportunities, and Challenges. Lerner TN, Ye L, and K Deisseroth. Cell. Transparent brains reveal effects of cocaine and fear (Nature). Microscopy: seeing through tissue (Nature Methods). CLARITY-optimized light-sheet microscopy (COLM). CLARITY training: The Deisseroth laboratory is now offering. Leading Edge Primer) 2016.

4

SWIFT3D Resources

http://clarityresourcecenter.com/functional3D.html

RNA detection in CLARITY. RNA detection in CLARITY. Observing and controlling volumetric dynamics at cellular and near-cellular resolution. Light Field Microscopy for 3D functional neuroimaging. The invention of light field microscopy:. Levoy M, Ng R, Adams A, Footer M, and M Horowitz. SIGGRAPH. See the Stanford Light Field Microscope Project. Page for details and much additional work. Levoy M, Zhang Z, and I McDowell. J Microscopy. Grosenick L, Anderson T, and SJ Smith. IEEE ISBI. First public demonstra...

5

CLARITY Supplementary Videos

http://clarityresourcecenter.com/clarity_movies.html

Video 1: Mouse brain (the hippocampus). Video 2: Mouse brain (the cortex, the hippocampus, and the thalamus). Video 3: Mouse brain (ventral half). Video 4: Mouse brain (ventral half). Video 5: Mouse brain (brainstem). Video 6: Mouse brain (1 mm thick coronal block). Video 8: Mouse brain (1 mm thick coronal block). Video 9: Mouse brain (1mm thick coronal block). Video 10: Mouse brain (1 mm thick coronal block). Video 11: Mouse brain (1 mm thick coronal block). Video 14: Mouse brain (the hippocampus).

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LINKS TO THIS WEBSITE

neuronsandglia.blogspot.com neuronsandglia.blogspot.com

The true lives of the fabulous Neurons and Glia.: ¡Arte Neural! - Clarity

http://neuronsandglia.blogspot.com/2015/02/arte-neural-clarity.html

The true lives of the fabulous Neurons and Glia. Porque todo está dentro de tu cabeza. Viernes, 6 de febrero de 2015. Mouse Brain (1 mm thick coronal block). Además de lograr una imagen bellisima la utilidad de esta técnica es muy alta. Por ejemplo, en los estudios de conectomica. Permiten facilitar la automatización del proceso, algo que resulta el cuello de botella de estos estudios. Si estáis interesados en los detalles os recomiendo esta página. Donde podéis encontrar muchos recursos y vídeos.

neuronsandglia.com neuronsandglia.com

Clarity | Neurons and Glia

http://www.neuronsandglia.com/2015/02/arte-neural-clarity

5 febrero, 2015. 12 febrero, 2015. Mouse Brain (1 mm thick coronal block). Además de lograr una imagen bellisima la utilidad de esta técnica es muy alta. Por ejemplo, en los estudios de conectomica. Permiten facilitar la automatización del proceso, algo que resulta el cuello de botella de estos estudios. Si estáis interesados en los detalles os recomiendo esta página. Donde podéis encontrar muchos recursos y vídeos. Haz clic para compartir en Twitter (Se abre en una ventana nueva). 1: neural orgy →.

neuronsandglia.blogspot.com neuronsandglia.blogspot.com

The true lives of the fabulous Neurons and Glia.: febrero 2015

http://neuronsandglia.blogspot.com/2015_02_01_archive.html

The true lives of the fabulous Neurons and Glia. Porque todo está dentro de tu cabeza. Jueves, 12 de febrero de 2015. Me he mudado a otro servidor, podrás seguir leyendome en neuronsandglia.com. Enviar por correo electrónico. Viernes, 6 de febrero de 2015. Mouse Brain (1 mm thick coronal block). Además de lograr una imagen bellisima la utilidad de esta técnica es muy alta. Por ejemplo, en los estudios de conectomica. Si estáis interesados en los detalles os recomiendo esta página. Enviar por correo elect...

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Ruminations of a researcher/writer. Skills and Services Available. Poor boys need to hope for more than janitorial work. November 25, 2011. Carter G. Woodson School. Service to my country. That September, I was one of three white men who showed up to teach at Carter G. Woodson. The principal and all the other teachers at the school were black women. When the principal met us, she gushed, I guess you’ll be our 10%! And sure enough, they were. So I let them. A white teacher perhaps a white person of any ki...

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CLARITY Resources

RNA detection in CLARITY. RNA detection in CLARITY. Scientific American Special Report 2016. CLARITY News and Techniques. Comparing Tissue Transparency Methods for Intact Analyses. From Communication in Neural Circuits: Tools, Opportunities, and Challenges. Lerner TN, Ye L, and K Deisseroth. Cell. Transparent brains reveal effects of cocaine and fear (Nature). Microscopy: seeing through tissue (Nature Methods). CLARITY-optimized light-sheet microscopy (COLM). D-lab Extended Workshop Information. Lerner T...

clarityresourcecenter.org clarityresourcecenter.org

CLARITY Resources

RNA detection in CLARITY. RNA detection in CLARITY. Scientific American Special Report 2016. CLARITY News and Techniques. Comparing Tissue Transparency Methods for Intact Analyses. From Communication in Neural Circuits: Tools, Opportunities, and Challenges. Lerner TN, Ye L, and K Deisseroth. Cell. Transparent brains reveal effects of cocaine and fear (Nature). Microscopy: seeing through tissue (Nature Methods). CLARITY-optimized light-sheet microscopy (COLM). D-lab Extended Workshop Information. Lerner T...

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