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CloVR | Automated Sequence Analysis from Your DesktopAutomated Sequence Analysis from Your Desktop
http://www.clovr.org/
Automated Sequence Analysis from Your Desktop
http://www.clovr.org/
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CloVR | Automated Sequence Analysis from Your Desktop | clovr.org Reviews
https://clovr.org
Automated Sequence Analysis from Your Desktop
CloVR - Public Datasets
Automated Sequence Analysis from Your Desktop. Dataset Name and Description. Acinetobacter baylyi 454 Inputs. This dataset contains 250,000 shotgun 454 titanium sequences (sff file) from an Acinetobacter baylyi genome project. Acinetobacter baylyi 454 Output. This dataset contains genes from the HMP DACC Anterior Nares body site (sample SRS018671). Output from CloVR-DigiNorm pipeline. Normalized dataset contains 55,617 reads (160,492 reads before normalization). E coli 454 Inputs. E coli 454 Output.
clovr.org
Background | CloVR
http://clovr.org/background
Automated Sequence Analysis from Your Desktop. And Nimbus Science Clouds.
Protocols | CloVR
http://clovr.org/methods
Automated Sequence Analysis from Your Desktop. CloVR currently supports the following sequence analysis protocols with wide application in microbial genomics. Each protocol consists in a pre-installed software pipeline for automated and reproducible sequence data processing. Supports large-scale, on-demand BLAST searches taking advantage of scalable cloud compute resources. Supports automated whole-genome assembly, gene finding and functional annotation of 454 and Illumina sequence data.
News | CloVR
http://clovr.org/category/news
Automated Sequence Analysis from Your Desktop. CloVR 1.0-RC7 release. CloVR 1.0-RC7, the seventh release candidate, is available for download. See release notes for more information. August 27, 2015. Comments Off on CloVR 1.0-RC7 release. CloVR 1.0-RC6 Release. CloVR 1.0-RC6, the sixth release candidate, is available for download. See release notes for more information. October 10, 2014. Comments Off on CloVR 1.0-RC6 Release. May 15, 2012. Comments Off on Release clovr-1.0-RC4. October 26, 2011. The firs...
CloVR 1.0-RC6 Release | CloVR
http://clovr.org/2014/10/10/clovr-1-0-rc6-release
Automated Sequence Analysis from Your Desktop. CloVR 1.0-RC6 Release. The sixth release candidate, is available for download. See release notes. October 10, 2014. This entry was posted in News.
Blog | CloVR
http://clovr.org/category/blog
Automated Sequence Analysis from Your Desktop. Great post about using CloVR for microbial genome annotation Microbial Annotation in the Cloud: CloVR and Ion Torrent. October 5, 2012. Comments Off on CloVR and IonTorrent. CloVR 454 and Illumina assembly. Ecoli 454 500k dataset. Ecoli 4M Illumina paired-end. Using the CloVR Dashboard to run assembly pipelines. Once loaded the page should look like the following:. We can select data found under the. Folder here via the Select file from image. Button or can ...
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Protein Life: R & D experience of a bioinformatician: September 2011
http://jeffreyliu99.blogspot.com/2011_09_01_archive.html
Protein Life: R and D experience of a bioinformatician. Friday, September 23, 2011. Gamers Unlock Protein Mystery That Baffled AIDS Researchers For Years. In just three weeks, gamers deciphered the structure of a key protein in the development of AIDS that has stumped scientists for years. According to a study. Published Sunday in the journal. Nature Structural and Molecular Biology. The findings could present a significant breakthrough for AIDS and HIV research. In a statement. “Games provide ...In Canc...
Institute for Genome Sciences - Introduction
http://igs.umaryland.edu/resources/irc
Cutting edge sequencing and computing. Population and Evolutionary Genomics. Post Docs and Students. Informatics Resource Center - Introduction. Interested in more info about a bioinformatics career at IGS? The Informatics Resource Center ( IRC. To provide comprehensive analysis for projects. The IRC has developed and maintained several tools and pipelines to facilitate research. Highlights of IRC's work include the NIH Human Microbiome Project Data Analysis and Coordination Center ( HMP DACC.
DIAG - Projects
http://www.diagcomputing.org/about/projects.php
Login not recognized, please retry. Login not recognized, please retry. DIAG is an important component of several bioinformatics related research projects. DIAG is currently providing computational resources for several bioinformatics software development projects, analysis efforts, and other initiatives that require large scale and highly performant compute resources and storage. Some of these are detailed below. In addition, the manual annotation tool Manatee.
CloVR - Infant Gut Metagenome Output
http://data.clovr.org/d/12/infant-gut-metagenome-output
Automated Sequence Analysis from Your Desktop. Infant Gut Metagenome Output. To download this dataset. Right click on the file name below and select "save link as" or "save target as". Your browser should then prompt you to pick a location on your computer to store the file. February 10, 2011. And Institute for Genome Sciences.
CloVR - E. coli Illumina Inputs
http://data.clovr.org/d/17/e-coli-illumina-inputs
Automated Sequence Analysis from Your Desktop. E coli Illumina Inputs. This dataset contains paired-end shotgun Illumina sequences (fastq format) from an E. coli genome project as well as the associated config file used in the CloVR-Microbe Illumina pipeline. To download this dataset. Right click on the file name below and select "save link as" or "save target as". Your browser should then prompt you to pick a location on your computer to store the file. February 10, 2011.
CloVR - Infant Gut Microbiome Inputs
http://data.clovr.org/d/7/infant-gut-microbiome-inputs
Automated Sequence Analysis from Your Desktop. Infant Gut Microbiome Inputs. Recently Koenig, Ley and colleagues (PNAS July 2010) studied changes in the developing infant gut microbiome using 16S sequencing with the 454 platform. A total of 63 samples were sequenced in multiplex resulting in over 300,000 16S fragments. This dataset contains all 16S rRNA sequences from the study (with barcoded tags), as well as associated mapping and config files used in the CloVR-16S pipeline. To download this dataset.
CloVR - Acinetobacter baylyi 454 Inputs
http://data.clovr.org/d/13/acinetobacter-baylyi-454-inputs
Automated Sequence Analysis from Your Desktop. Acinetobacter baylyi 454 Inputs. This dataset contains 250,000 shotgun 454 titanium sequences (sff file) from an Acinetobacter baylyi genome project as well as the associated config file used in the CloVR-Microbe 454 pipeline. To download this dataset. Right click on the file name below and select "save link as" or "save target as". Your browser should then prompt you to pick a location on your computer to store the file. February 10, 2011.
DIAG - News
http://www.diagcomputing.org/news/news.php
Login not recognized, please retry. Login not recognized, please retry. Large-scale analysis has now become an integral part of nearly all research areas in biology. Institute for Genome Sciences. DIAG presented at AGBT 2012. DIAG presented at Genome Informatics 2011. CloVR and DIAG presented at ISMB/ECCB 2011. Whole Genome Sequence Data for German E. Coli Outbreak Strain. An international team of experts on E. coli collaborated on the rapid sequencing project. MORE.
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Recent Headlines in the Clover Region: About This Site
Raquo; Your one-stop dashboard for local headlines. The Clover Network is pleased to offer this handy dashboard for surfing all the latest headlines from blogs, newspapers and other news media in Berkshire. Counties. Just click on any of the four county names above (also in the menu at right) to get started. The site is automatically updated whenever a regional source adds an item to its site. Additional counties and sources plus original news items and editorials will be added over time.
CloVR | Automated Sequence Analysis from Your Desktop
Automated Sequence Analysis from Your Desktop. And run test applications on the DIAG cloud. Download and install CloVR to run supported microbial sequence analysis locally or on the cloud. The Cloud Virtual Resource supports user-friendly automated microbial sequence analysis applications. The ninth release candidate, is available for download. See release notes. For more information. #. Read older CloVR news. Join the CloVR email list. To ask questions and see announcements. Samuel V. Angiuoli.
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