clusterflow.io
Cluster FlowCluster Flow: A simple and flexible bioinformatics pipeline tool
http://www.clusterflow.io/
Cluster Flow: A simple and flexible bioinformatics pipeline tool
http://www.clusterflow.io/
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Cluster Flow | clusterflow.io Reviews
https://clusterflow.io
Cluster Flow: A simple and flexible bioinformatics pipeline tool
clusterflow.io
Examples: Cluster Flow
http://www.clusterflow.io/examples
You can see some static examples of what to expect from Cluster Flow below. If you like, you can try these out in the online demo. Finding out what's available with Cluster Flow. Cluster Flow has a number of functions to list installed pipelines, modules and reference genomes:. You can run modules and pipelines with varying numbers of extra parameters, to give increasing degrees of flexibility:. Cf sra trim *.sra. Cf samtools sort index *.bam. Cf - genome GRCh37 fastq tophat *fastq.gz. To find out more a...
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Open Source at SciLifeLab » Cluster Flow
http://opensource.scilifelab.se/projects/clusterflow
Automate and standardise bioinformatics analyses on cluster environments. What is Cluster Flow? Cluster Flow is a command-line program which uses common cluster managers to run analysis pipelines. It currently supports GRIDEngine (SGE), LSF and SLURM as well as running locally on any unix system. Benefits of using Cluster Flow:. Routine analyses are very quick to run. Pipelines use identical parameters, standardising analysis and making results more reproducable. Very lightweight and flexible.
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Cluster Flow
A simple and flexible bioinformatics pipeline tool. Cluster Flow is designed to be quick and easy to install, with flexible configuration and simple customization. It's easy enough to set up and use for non-bioinformaticians (given a basic knowledge of the command line), and it's simplicity makes it great for low to medium throughput analyses. Why choose Cluster Flow? Installation walkthroughs and a large module toolset mean you get up and running quickly. Getting Started with Cluster Flow.
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