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Comparasite full-length cdna databasexxxx
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Comparasite full-length cdna database | comparasite.hgc.jp Reviews
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Statistics of the Database
http://comparasite.hgc.jp/docs/statistics.htm
Statistics of the Database. Table 1. Statistics of the RNA-Seq tags. Table 2. Statistics of the 5'EST and Shotgun Sequences. A) Full-Parasites and (B) Full-Arthropods. 4,229/ 2,847. 3,504/ 2,659. 2,892/ 2,181. 2,213/ 1,390. 4,053/ 2,225. 6,346/ 2,596. 10,399/ 4,821. 1 Number of assembles were counted for which an open reading frame of the amino acids of 100 amino acids was detected. Note that for Full-Anopheles, gap closure was not performed due to the lack of the reference genome information.
Help | Comparasite full-length cdna database
http://comparasite.hgc.jp/docs/help.htm
A Select the species for which the search will be considered. B Specify the annotation terms which should be found in the target(s): Parameters used for generating annotations can be also adjusted. Ii) Comparative Results Summary. C Search conditions used. D Summary of the hits and links to details. Iii) Comparative Motif Viewer. A Go to Promoter Element Viewer. B Display search conditions if used. C Structure of the hit Ref-fulls and links to Genome Viewer. D Link to Pair-wise alignment by Lalign. Pleas...
About Comparasite | Comparasite full-length cdna database
http://comparasite.hgc.jp/docs/sites.htm
TIGR: http:/ www.tigr.org/tdb/e2k1/pfa1/. Sanger Centre: http:/ www.sanger.ac.uk/Projects/P falciparum/. Stanford University (USA): http:/ sequence-www.stanford.edu/group/malaria/index.html. NCBI: http:/ www.ncbi.nlm.nih.gov/projects/Malaria/. PlasmoDB (Univ. of Pennsylvania): http:/ plasmodb.org/. WHO: http:/ www.who.int/health-topics/malaria.htm. MalariaFoundation: http:/ www.malaria.org/. We welcome your comments and feedback about our database.
About Comparasite | Comparasite full-length cdna database
http://comparasite.hgc.jp/docs/experimental.htm
I) Preparation of parasites. 3D7 parasites were cultured either in a candle jar (XPFn, XPF2n) or in the mixed gas consisting of 3% oxygen, 5% carbon dioxide and 92% nitrogen using blood type A erythrocytes and frozen human plasma. Blood samples were collected from the Indonesian patients with P.vavax. 17XL (XPYw), P. yoelii. 17XNL (XPYs) and P. berghei. ANKA were propagated in vivo in five-week old female ICR mice. Blood was filtrated through Plamsodipur filter to remove white blood cells. Oocysts. F...
About Comparasite | Comparasite full-length cdna database
http://comparasite.hgc.jp/docs/glossary.htm
Information attached to the genomic or cDNA sequence to give a clue to its biological functions. Protein coding sequence. Full-length cDNA - cDNA containing the entire sequence from the cap structure to polyA. Genomic regions where CG dinucleotides are statistically enriched compare to other regions. It is supposed that the transcription regulations mediated by DNA methylation play pivotal roles in the formation and functions of CpG islands. The place where the protein exists in the cell. Abbreviated...
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Comparasite full-length cdna database
Search by clone(gene) name. Comparasite, an integrated database of our original full-length cDNA sequence data, consists of seven sub-databases of apicomplexa protozoa, Plasmodium falciparum. 12,484 cDNA sequences), Plasmodium yoelii. 11,262 sequences), Plasmodium vivax. 9,633 sequences), Plasmodium berghei. 1,518 sequences), Toxoplasma gondii. 7,400 sequences), Cryptosporidium parvum. 5,921 sequences) and a tapeworm, Echinococcus multilocularis. Ajioka et al, "Common Inheritance of Chromosome Ia Associa...
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