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NSF Cotton Fiber Genomics Project - The Chen Lab at the University of Texas at Austin

NSF Cotton Fiber Genomics Project - The Chen Lab at the University of Texas at Austin

http://cottongenomics.biosci.utexas.edu/

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NSF Cotton Fiber Genomics Project - The Chen Lab at the University of Texas at Austin | cottongenomics.biosci.utexas.edu Reviews
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NSF Cotton Fiber Genomics Project - The Chen Lab at the University of Texas at Austin
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KEYWORDS
1 NSF plant genomics project
2 Molecular basis of Cotton Fiber Initiation
3 Cotton ESTs
4 Functional genomics
5 Oligo-gene Microarray
6 Gene expression study
7 Seed Trichome
8 Naked seed mutants
9 The roles pf Pollination and embryogenesis in fiber initiation
10 The roles of hormonal regulation in fiber initiation
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KEYWORDS ON
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skip to content,research,chen lab,haigler lab,scheffler lab,stelly lab,project,cotton,fiber development,arabidopsis trichome,fiber physiology,objectives,progress,participants,outreach,education and outreach,workshop,workshopphotos,publications,news,data
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NSF Cotton Fiber Genomics Project - The Chen Lab at the University of Texas at Austin | cottongenomics.biosci.utexas.edu Reviews

https://cottongenomics.biosci.utexas.edu

NSF Cotton Fiber Genomics Project - The Chen Lab at the University of Texas at Austin

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cottongenomics.biosci.utexas.edu cottongenomics.biosci.utexas.edu
1

Publications - NSF Cotton Fiber Genomics Project - The Chen Lab at the University of Texas at Austin

http://cottongenomics.biosci.utexas.edu/publications.php

Skip to main navigation. Skip to first column. Skip to second column. Plant Genome Outreach Portal. L acc TM-1) provides a resource for fiber improvement. Genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites. Song, Q., Guan, X., and Chen, Z. J. (2015) Dynamic roles for small RNAs and DNA methylation during ovule and fiber development in allotetraploid cotton. Song, Q. and Chen, Z. J . 2015) Epigenetic and developmental regulation in plant polyploids.

2

Project Participants - NSF Cotton Fiber Genomics Project - The Chen Lab at the University of Texas at Austin

http://cottongenomics.biosci.utexas.edu/participants.php

Skip to main navigation. Skip to first column. Skip to second column. Plant Genome Outreach Portal. Raquo; Project » Participants. Z Jeffrey Chen (PI). Nichols An (Undergraduate, Biology). Steven Hyon (Undergraduate, Biology). Section of Molecular Cell and Developmental Biology, Center for Computational Biology and Bioinformatics, and Institute for Cellular and Molecular Biology, University of Texas at Austin. John Rich Tuttle (Postdoc). Dorarean Ford (MS student). Amanda Hulse (PhD student).

3

Project Objectives - NSF Cotton Fiber Genomics Project - The Chen Lab at the University of Texas at Austin

http://cottongenomics.biosci.utexas.edu/project/objectives.php

Skip to main navigation. Skip to first column. Skip to second column. Plant Genome Outreach Portal. Raquo; Project » Project Objectives. Comparatively sequence transcriptomes in targeted stages of fiber development in. Test functions of the genes associated with fiber cell initiation and cell wall thickening. Develop a sequence-based BAC physical map in allotetraploid cotton (. L) using the restriction site-associated DNA (RAD) technology coupled with ultra-deep sequencing. April 20, 2015.

4

Project Participants - NSF Cotton Fiber Genomics Project - The Chen Lab at the University of Texas at Austin

http://cottongenomics.biosci.utexas.edu//participants.php

Skip to main navigation. Skip to first column. Skip to second column. Plant Genome Outreach Portal. Raquo; Project » Participants. Z Jeffrey Chen (PI). Nichols An (Undergraduate, Biology). Steven Hyon (Undergraduate, Biology). Section of Molecular Cell and Developmental Biology, Center for Computational Biology and Bioinformatics, and Institute for Cellular and Molecular Biology, University of Texas at Austin. John Rich Tuttle (Postdoc). Dorarean Ford (MS student). Amanda Hulse (PhD student).

5

NSF Cotton Fiber Genomics Project - The Chen Lab at the University of Texas at Austin

http://cottongenomics.biosci.utexas.edu/links.php

Skip to main navigation. Skip to first column. Skip to second column. Plant Genome Outreach Portal. Cotton Gene Index (CGI). Plant Transcription Factor Database. International Cotton Genome Initiative (ICGI). UNCTAD Information on Cotton. Cotton Comparative and Evolutionary Genomics. Clemson University Genomics Institute (CUGI). CSRIO Cotton Textile Australia. Cotton Research Institute of China. Central Institute for Cotton Research (CICR) of India. Central Cotton Research Institute (CCRI) of Pakistan.

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polyploidy.biosci.utexas.edu polyploidy.biosci.utexas.edu

The Chen Laboratory

http://polyploidy.biosci.utexas.edu/people.php

Skip to main navigation. Skip to first column. Skip to second column. Circadian Rrhythms and Heterosis. Polyploidy and Hybrid Incompatibility. Polyploidy and Small RNAs.

polyploidy.biosci.utexas.edu polyploidy.biosci.utexas.edu

The Chen Laboratory

http://polyploidy.biosci.utexas.edu//data.php

Skip to main navigation. Skip to first column. Skip to second column. Circadian Rrhythms and Heterosis. Polyploidy and Hybrid Incompatibility. Polyploidy and Small RNAs. Sensitivity of 70-mer oligonucleotides and cDNA microarrays in Arabidopsis and its related species. PubMed. Genomewide nonadditive gene regulation in. Genome-wide expression changes in. Histone deacetylase 1 (. Gene expression changes in. Duplicate genes increase expression diversity in allopolyploids and their progenitors. PubMed.

polyploidy.biosci.utexas.edu polyploidy.biosci.utexas.edu

The Chen Laboratory

http://polyploidy.biosci.utexas.edu//news.php

Skip to main navigation. Skip to first column. Skip to second column. Circadian Rrhythms and Heterosis. Polyploidy and Hybrid Incompatibility. Polyploidy and Small RNAs. April 20, 2015. A University of Texas at Austin scientist, working with an international research team, has developed the most precise sequence map. Yet of U.S. cotton and will soon create an even more detailed map for navigating the complex cotton genome. Full Story. The research in the USA team is supported by NSF. June 3, 2013. These ...

polyploidy.biosci.utexas.edu polyploidy.biosci.utexas.edu

The Chen Laboratory

http://polyploidy.biosci.utexas.edu/circadian.php

Skip to main navigation. Skip to first column. Skip to second column. Circadian Rrhythms and Heterosis. Polyploidy and Hybrid Incompatibility. Polyploidy and Small RNAs. Circadian Rhythms and Heterosis. Circadian Rhythms and Heterosis. That have redundant but non-overlapping functions, while CCA1 and LHY bind to the promoter of. And inhibit its expression. CHE interacts with TOC1 and binds to. Promoter and promotes its expression, whereas CCA1 and LHY repress. Wikipedia about Circadian Rhythms. De Montai...

polyploidy.biosci.utexas.edu polyploidy.biosci.utexas.edu

The Chen Laboratory

http://polyploidy.biosci.utexas.edu/teaching.php

Skip to main navigation. Skip to first column. Skip to second column. Circadian Rrhythms and Heterosis. Polyploidy and Hybrid Incompatibility. Polyploidy and Small RNAs. Now offering each Spring semester.

polyploidy.biosci.utexas.edu polyploidy.biosci.utexas.edu

The Chen Laboratory

http://polyploidy.biosci.utexas.edu/polyploidy.php

Skip to main navigation. Skip to first column. Skip to second column. Circadian Rrhythms and Heterosis. Polyploidy and Hybrid Incompatibility. Polyploidy and Small RNAs. Poplar tree, grapevine, maize, and soybean. Of flowering plants, over 70% may be recent polyploids, of which 75% are allopolyploids. Allopolyploids in. Have been recently formed in natural conditions. For example,. Duplication of a single genome. Examples include potato, alfalfa, banana, and watermelon. Cotton, and wheat. 10 to 20% from.

polyploidy.biosci.utexas.edu polyploidy.biosci.utexas.edu

The Chen Laboratory

http://polyploidy.biosci.utexas.edu/alumni-highlights.php

Skip to main navigation. Skip to first column. Skip to second column. Circadian Rrhythms and Heterosis. Polyploidy and Hybrid Incompatibility. Polyploidy and Small RNAs. Dr Jennifer Tate, Former Postdoc; Current Position: Senior Lecturer in Plant Systematics. Dr Naeem Syed, Former Postdoc; Current Position: Senior Lecturer in School of Human and Life Sciences. At Canterbury Christ Church University. Dr Andrew Woodward, Former Postdoc; Current Position: Assistant Professor in Biology. Hong Kong, China.

polyploidy.biosci.utexas.edu polyploidy.biosci.utexas.edu

The Chen Laboratory

http://polyploidy.biosci.utexas.edu/teaching/BIO384K-BIO337.php

Skip to main navigation. Skip to first column. Skip to second column. Circadian Rrhythms and Heterosis. Polyploidy and Hybrid Incompatibility. Polyploidy and Small RNAs. Prerequisite: graduate courses or upper-level undergraduate courses in Genetics and/or Molecular Biology.

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Skip to main content. Links to Variety Testing Data. Links to NCBI SRA Datasets. Search Genes and Transcripts. Become an ICGI Member. Genomic, Genetic and Breeding Resources for Cotton Research. Discovery and Crop Improvement. ICGI 2018 Conference Updates (03/12/18). ICGI Conference, May 28-Jun 1, 2018, Edinburgh, Scotland (12/14/17). CottonGen activities at 2018 Beltwide and PAG Conferences (12/14/17). ICGI Workshop at PAG 2018 Jan 14, San Diego (12/14/17). Major Species Quick Start.

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NSF Cotton Fiber Genomics Project - The Chen Lab at the University of Texas at Austin

Skip to main navigation. Skip to first column. Skip to second column. Plant Genome Outreach Portal. Is also a model for research on plant genome evolution and polyploidy. The project goals are to identify cotton genes and regulatory sequences that are important to fiber cell development and cellulose biosynthesis. Contemporary genomic resources will be developed for sequencing, assembling, and annotating the genomes of two major cultivated tetraploid species (. April 20, 2015. October 24, 2011. The annua...

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Harvest, Fiber Quality and Ginning. This website was developed to provide rapid access to a large quantity of information pertaining to cotton production systems. Funding for the development was provided through the cotton producer check-off program administered by the Texas State Support Committee (TSSC) - Cotton Incorporated. At 979-845-2425 or gdmorgan@tamu.edu. Or Dr Seth Byrd. At 806-746-6101 or seth.byrd@ag.tamu.edu. To install this program.

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