genomics.cribi.unipd.it
Giorgio Valle Group | Genomics and Bioinformatics Unit – University of Padua
http://genomics.cribi.unipd.it/index.php/CRIBI_Genomics:General_disclaimer
Group is headed by Giorgio Valle and is working on several aspects of genomic research, ranging from bioinformatics to large scale genome analysis. Our labs are located at the CRIBI Biotechnology Center and at the Department of Biology in the Interdepartmental Biological Building of the University of Padua, Italy. As a part of CRIBI, we are open to collaborations and we offer advanced services. For Next Generation Sequencing (NGS) and Bioinformatics. PASS-BIS: A novel aligner for methylome studies.
genomics.cribi.unipd.it
Projects | Giorgio Valle Group
http://genomics.cribi.unipd.it/main/category/projects
May 30, 2013. The Nannochloropsis gaditana genome project produced a high-quality genome draft, with chromosome scale scaffolds, and an interesting analysis of the transcriptome response to Nitrogen deprivation. PASS-BIS: A novel aligner for methylome studies. ScaMPI: a user friendly framework for genome assembly.
genomics.cribi.unipd.it
Papers | Giorgio Valle Group
http://genomics.cribi.unipd.it/main/about-us/papers
Corteggiani Carpinelli E, Telatin A, Vitulo N, Forcato F, D’Angelo M, Schiavon R, Vezzi A, Giacometti G M, Morosinotto T, Valle G. Chromosome scale genome assembly and transcriptome profiling of. Molecular Plant. 2013. Campagna D, Telatin A, Forcato C, Vitulo N, Valle G. PASS-bis: a bisulfite aligner suitable for whole methylome analysis of Illumina and SOLiD reads. BMC Genomics. 2012. Tomato Genome Consortium. The tomato genome sequence provides insights into fleshy fruit evolution. PLoS One. 2011.
www2.cribi.unipd.it
Contact us | CRIBI Biotechnology Center
http://www2.cribi.unipd.it/about-us/contact-us
This is a test site. Go to the CRIBI site. Http:/ www.cribi.unipd.it/about-us/contact-us/. We are located at:. Viale G. Colombo, 3. Bando di selezione assegno. Avviso di procedura comparativa per l’individuazione di un collaboratore per un incarico di prestazione autonoma occasionale/professionale per attività di supporto alla ricerca. Approvazione atti Assegno di Ricerca.
genomics.cribi.unipd.it
About us | Giorgio Valle Group
http://genomics.cribi.unipd.it/main/about-us
Giorgio Valle Research Group. How to reach us. PASS-BIS: A novel aligner for methylome studies. ScaMPI: a user friendly framework for genome assembly.
genomics.cribi.unipd.it
Projects | Giorgio Valle Group
http://genomics.cribi.unipd.it/main/projects
Our research group deals with several aspects of genomics and bioinformatics, both with biological and technological interests. Human Genome (and Exome) resequencing. RNA-Seq, Bisulfite-Seq, ChIP-Seq. Bioinformatic algorithms and strategies. Sequence alignment algorithms for short reads and bisulfite sequencing ( PASS. Genome assembly and scaffolding ( ScaMPI. Complex query for large dataset data-mining ( QueryOR. Structural variations identifications, SNP calling. Gene expression profiling via RNA-Seq.
genomics.cribi.unipd.it
QueryOR | Giorgio Valle Group
http://genomics.cribi.unipd.it/main/bioinformatics/queryor
ScaMPI: a user friendly framework for genome assembly. Paper released →. August 9, 2013. Is a web-based query platform that aggregates several functional annotation of variants and genes for giving valuable prioritization criteria to reduce the search space of analysis. The prioritization strategy consist in a ranking system that sorts results based on the satisfied criteria, in contrast with other developed tools that applies filters to reduce the results. The platform is available for analysis of VCF.
genomics.cribi.unipd.it
PASS-BIS: A novel aligner for methylome studies | Giorgio Valle Group
http://genomics.cribi.unipd.it/main/bioinformatics/pass-bis-methylome
PASS-BIS: A novel aligner for methylome studies. August 29, 2013. We recently published and released PASS-BIS. A modified version of the PASS aligner to enable fast and efficient bisulfite-treated reads mapping, both in color-space and in base-space. The article is online. And the PASS-BIS package. Is freely available for download. This entry was posted in Bioinformatics. PASS-BIS: A novel aligner for methylome studies. ScaMPI: a user friendly framework for genome assembly.
genomics.cribi.unipd.it
People | Giorgio Valle Group
http://genomics.cribi.unipd.it/main/about-us/people
Post-docs, Research fellows:. PASS-BIS: A novel aligner for methylome studies. ScaMPI: a user friendly framework for genome assembly.
