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Generic Genome Browser

Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. To find out more about...

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<META> DESCRIPTION

Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. To find out more about...

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1 documentation

2 srv/www/htdocs/tutorial

3 srv/www/htdocs/example scripts

4 example databases

5 simple example

6 advanced example

7 yeast renderfarm example

8 etc/init d/gbrowse start

9 alternative urls

10 http / your host/gb2/gbrowse/yeast

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documentation,srv/www/htdocs/tutorial,srv/www/htdocs/example scripts,example databases,simple example,advanced example,yeast renderfarm example,etc/init d/gbrowse ***** start,alternative urls,http / your host/gb2/gbrowse/yeast,accelerated demos,fastcgi

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Generic Genome Browser | cricket.ornl.gov Reviews

https://cricket.ornl.gov

Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. To find out more about...

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cricket.ornl.gov

1

GBrowse Login Required

http://cricket.ornl.gov/gb2/gbrowse/yeast

Anaerocellum thermophilum DSM 6725. Azoarcus sp. BH72. Caldicellulosiruptor saccharolyticus DSM 8903. Clostridium acetobutylicum ATCC 824. Clostridium beijerinckii NCIMB 8052. Clostridium clariflavum DSM 19732. Clostridium thermocellum ATCC 27405. Clostridium thermocellum ATCC 27405 - Mutant. Clostridium thermocellum CP000568.1. Cytophaga hutchinsonii ATCC 33406. Enterobacter sp. 638. Gluconacetobacter diazotrophicus PAl 5. Gluconacetobacter diazotrophicus PAl 5. Pyrococcus furiosus DSM 3638.

2

GBrowse Administration Tutorial

http://cricket.ornl.gov/tutorial/tutorial.html

Generic Genome Browser Version 2: A Tutorial for Administrators. Author: Lincoln Stein, 20 January 2010. This is an extensive tutorial to take you through the main features and gotchas of configuring GBrowse as a server. This tutorial assumes that you have successfully set up Perl, GD, BioPerl and the other GBrowse dependencies. If you haven't, please see the GBrowse HOWTO. During most of the tutorial, we will be using the "in-memory" GBrowse database (no relational database required! To introduce you to...

3

GBrowse Login Required

http://cricket.ornl.gov/cgi-bin/gb2/gbrowse/yeast_renderfarm

Anaerocellum thermophilum DSM 6725. Azoarcus sp. BH72. Caldicellulosiruptor saccharolyticus DSM 8903. Clostridium acetobutylicum ATCC 824. Clostridium beijerinckii NCIMB 8052. Clostridium clariflavum DSM 19732. Clostridium thermocellum ATCC 27405. Clostridium thermocellum ATCC 27405 - Mutant. Clostridium thermocellum CP000568.1. Cytophaga hutchinsonii ATCC 33406. Enterobacter sp. 638. Gluconacetobacter diazotrophicus PAl 5. Gluconacetobacter diazotrophicus PAl 5. Pyrococcus furiosus DSM 3638.

4

GBrowse Login Required

http://cricket.ornl.gov/cgi-bin/gb2/gbrowse/yeast

Anaerocellum thermophilum DSM 6725. Azoarcus sp. BH72. Caldicellulosiruptor saccharolyticus DSM 8903. Clostridium acetobutylicum ATCC 824. Clostridium beijerinckii NCIMB 8052. Clostridium clariflavum DSM 19732. Clostridium thermocellum ATCC 27405. Clostridium thermocellum ATCC 27405 - Mutant. Clostridium thermocellum CP000568.1. Cytophaga hutchinsonii ATCC 33406. Enterobacter sp. 638. Gluconacetobacter diazotrophicus PAl 5. Gluconacetobacter diazotrophicus PAl 5. Pyrococcus furiosus DSM 3638.

5

Yeast chromosomes 1+2 (advanced): 37 kbp from chrI:143,000..180,000

http://cricket.ornl.gov/gb2/gbrowse/yeast_advanced

Dump selection as FASTA. Submit selection to UCSC BLAT. Submit selection to NCBI BLAST. Help with this browser. Show my user ID. Log in / create account. Yeast chromosomes 1 2 (advanced): 37 kbp from chrI:143,000.180,000. ChrI:80,000.120,000. Download Decorated FASTA File. Anaerocellum thermophilum DSM 6725. Azoarcus sp. BH72. Caldicellulosiruptor saccharolyticus DSM 8903. Clostridium acetobutylicum ATCC 824. Clostridium beijerinckii NCIMB 8052. Clostridium clariflavum DSM 19732. Enterobacter sp. 638.

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Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. To find out more about...

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