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Human Chromosome 21 SNP Database

Human Chromosome 21 cSNP. A joint project between the Division of Medical. Of the University of Geneva Medical School. The Swiss Institute of Bioinformatics. Chromosome 21 is the smallest human chromosome, the long arm of which comprises 34 MB of DNA sequence. The completion of its nucleotide sequence revealed 225 genes. It is associated with a number of human pathologies such as Down syndrome, as well as several monogenic and complex genetic disorders. Mailto:Samuel.Deutsch@medicine.unige.ch.

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Human Chromosome 21 SNP Database | csnp.isb-sib.ch Reviews

<META> DESCRIPTION

Human Chromosome 21 cSNP. A joint project between the Division of Medical. Of the University of Geneva Medical School. The Swiss Institute of Bioinformatics. Chromosome 21 is the smallest human chromosome, the long arm of which comprises 34 MB of DNA sequence. The completion of its nucleotide sequence revealed 225 genes. It is associated with a number of human pathologies such as Down syndrome, as well as several monogenic and complex genetic disorders. Mailto:Samuel.Deutsch@medicine.unige.ch.

<META> KEYWORDS

1 university of geneva

2 database and map

3 swiss institute of

4 bioinformatics

5 genetics

6 gene table

7 blast search

8 text search

9 methods

10 csnp queries

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university of geneva,database and map,swiss institute of,bioinformatics,genetics,gene table,blast search,text search,methods,csnp queries,database queries

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Human Chromosome 21 SNP Database | csnp.isb-sib.ch Reviews

https://csnp.isb-sib.ch

Human Chromosome 21 cSNP. A joint project between the Division of Medical. Of the University of Geneva Medical School. The Swiss Institute of Bioinformatics. Chromosome 21 is the smallest human chromosome, the long arm of which comprises 34 MB of DNA sequence. The completion of its nucleotide sequence revealed 225 genes. It is associated with a number of human pathologies such as Down syndrome, as well as several monogenic and complex genetic disorders. Mailto:Samuel.Deutsch@medicine.unige.ch.

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csnp.isb-sib.ch

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Human Chromosome 21 SNP Database

http://csnp.isb-sib.ch/csnp_gene_table.html

Human Chromosome 21 cSNP Database and MAP. Swiss Institute of Bioinformatics.

2

Methods

http://csnp.isb-sib.ch/csnp_methods.html

Sequence handling, clustering and alignments. We extracted from the EMBL database all sequences annotated as human chromosome 21 that were at least 10 kb in length using the getchrom script. These sequences were filtered against Repbase and Repsim, (a database of simple repeats) in order to mask repeats and low complexity sequences. Candidate SNP regions where detected with the aid of a new program called snp detect. This algorithm scans a multiple alignment composed of genomic, mRNA and EST sequence...

3

Human Chromosome 21 SNP Database

http://csnp.isb-sib.ch/csnp_blast_form.html

Human Chromosome 21 cSNP Database and MAP. Swiss Institute of Bioinformatics. Reward for a nucleotide match. Penalty for a nucleotide mismatch (blastn). Cost to open a gap (blastn). Cost to extend a gap (blastn). Expectation value (blastn and tblastn). See here for valid formats. EMBL ID or AC. SWISS-PROT ID or AC. Comments, suggestions and troubleshooting reports should be sent to P.B. Back to HC21 SNP home page.

4

Human Chromosome 21 SNP Database

http://csnp.isb-sib.ch/csnp_query_form.html

Human Chromosome 21 cSNP Database and MAP. Swiss Institute of Bioinformatics. Enter your query in the boxes below. A document matches a box if all words within it appear in one field of. The document. The AND and BUT NOT operators limit retrieval and the OR operator expands it. The documents matching a box are combined with boxes following it using the selected operators.

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Human Chromosome 21 SNP Database

Human Chromosome 21 cSNP. A joint project between the Division of Medical. Of the University of Geneva Medical School. The Swiss Institute of Bioinformatics. Chromosome 21 is the smallest human chromosome, the long arm of which comprises 34 MB of DNA sequence. The completion of its nucleotide sequence revealed 225 genes. It is associated with a number of human pathologies such as Down syndrome, as well as several monogenic and complex genetic disorders. Mailto:Samuel.Deutsch@medicine.unige.ch.

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