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The Comparative Toxicogenomics Database | CTD

The Comparative Toxicogenomics Database (CTD) illuminates how environmental chemicals affect human health.

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The Comparative Toxicogenomics Database | CTD | ctdbase.org Reviews
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The Comparative Toxicogenomics Database (CTD) illuminates how environmental chemicals affect human health.
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2 CTD
3 environmental chemicals
4 genes
5 diseases
6 PubMed
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8 invertebrates
9 organisms
10 chemical-gene interactions
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The Comparative Toxicogenomics Database | CTD | ctdbase.org Reviews

https://ctdbase.org

The Comparative Toxicogenomics Database (CTD) illuminates how environmental chemicals affect human health.

INTERNAL PAGES

ctdbase.org ctdbase.org
1

VennViewer | CTD

http://ctdbase.org/tools/vennViewer.go

Illuminating how chemicals affect human health. Create a Venn diagram to compare associated data sets for up to three chemicals, diseases, or genes. Select your input type. Names, synonyms, or IDs, or CAS RNs). Diseases (MeSH or OMIM names, synonyms, or IDs). Genes (NCBI symbols or IDs). Choose the data sets to compare. Chemical–gene interaction type. 8212; chemical synthesis. 8212; N-linked glycosylation. 8212; O-linked glycosylation. Data updated August 1, 2016.

2

Email List Help | CTD

http://ctdbase.org/help/emailListHelp.jsp

Illuminating how chemicals affect human health. Unsubscribe or Change Settings. NC State Email List Services. No intro document exists for the ctd-users list. The CTD-Users list provides news about CTD: the Comparative Toxicogenomics Database. Only CTD staff can post to this list.You can subscribe to the list, or change your existing subscription, in the sections below. Posts in the last 30 days. Http:/ lists.ncsu.edu/cgi-bin/digest? Of the Available Archives. Post to the List. Introduction to the List.

3

MyVenn | CTD

http://ctdbase.org/tools/myVenn.go

Illuminating how chemicals affect human health. Create a Venn diagram. To view relationships among your lists of CTD chemicals, diseases, genes, GO terms or pathways, or any other data. Select your input type. Names, synonyms, or IDs, or CAS RNs). Diseases (MeSH or OMIM names, synonyms, or IDs). Genes (NCBI symbols or IDs). Gene Ontology terms (GO names, synonyms, or IDs). Pathways (KEGG or REACTOME names or IDs). Enter your data sets. Terms (return-, tab- or -delimited). Data updated August 1, 2016.

4

Glossary | CTD

http://ctdbase.org/help/glossary.jsp

Illuminating how chemicals affect human health. Chemical–Gene Interaction Types. Chemical–Disease Interaction Types. Gene–Disease Interaction Types. Chemical–Gene Interaction Types. CTD curates chemical–gene and –protein interactions in vertebrates and invertebrates using this hierarchical vocabulary of interaction types ( download it. The abundance of a chemical (if chemical synthesis is not known). An elemental function of a molecule. Involving the use of two or more chemicals simultaneously. 8212; N-l...

5

Citing/Publications/Use | CTD

http://ctdbase.org/about/publications

Illuminating how chemicals affect human health. Presentations, Posters, Etc. Users of CTD Data. To cite CTD in your publications:. Davis AP, Grondin CJ, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database's 10th year anniversary: update 2015. Nucleic Acids Res. 2015 Jan;43 (Database issue): D914-20. To cite specific data. Grondin CJ, Davis AP, Wiegers TC, King BL, Wiegers JA, Reif DM, Hoppin JA, Mattingly CJ. Database (Oxford). 2...

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CaGeDB

http://cagedb.uhlenlab.org/documentation.html

Genes connected to calcium signaling and their associated diseases. The following databases were used to create CaGeDB:. Online Mendelian Inheritance in Men (OMIM). Comparative Toxicogenomics Database (ctd). Medical Subject Headings (MeSH). Venn diagram of the genes annotated with the selected GO terms in the Ensembl (red) and NCBI Gene (turquoise) databases. Move the cursor over the circles to see the number of genes in each database. This sunburst diagram shows the occurrence of calcium genes associati...

bioportal.bioontology.org bioportal.bioontology.org

Search Resource Resources | NCBO BioPortal

http://bioportal.bioontology.org/resource_index

Matched documents must contain:. Only Show Autocomplete Results From. Adverse Event Reporting Ontology (AERO). Adverse Outcome Pathway Ontology (AOPO). Allen Brain Atlas (ABA) Adult Mouse Brain Ontology (ABA-AMB). Allergy Detector II (ALLERGYDETECTOR). Alzheimers disease ontology (ADO). Amino Acid Ontology (AMINO-ACID). Amphibian Gross Anatomy Ontology (AAO). Amphibian Taxonomy Ontology (ATO). An ontology for experimental actions (EXACT). Anatomic Pathology Lexicon (PATHLEX). Basic Formal Ontology (BFO).

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Search Resource Resources | NCBO BioPortal

http://bioportal.bioontology.org/resources

Matched documents must contain:. Only Show Autocomplete Results From. Adverse Event Reporting Ontology (AERO). Adverse Outcome Pathway Ontology (AOPO). Allen Brain Atlas (ABA) Adult Mouse Brain Ontology (ABA-AMB). Allergy Detector II (ALLERGYDETECTOR). Alzheimers disease ontology (ADO). Amino Acid Ontology (AMINO-ACID). Amphibian Gross Anatomy Ontology (AAO). Amphibian Taxonomy Ontology (ATO). An ontology for experimental actions (EXACT). Anatomic Pathology Lexicon (PATHLEX). Basic Formal Ontology (BFO).

pharmacomicrobiomics.com pharmacomicrobiomics.com

PharmacoMicrobiomics

http://www.pharmacomicrobiomics.com//view/publication

PharmacoMicrobiomics: The Drug-Microbiome Portal. How Bugs Modulate Drugs? Launched on 11/11/11; Current Release 1.3 (21 March 15). View All Entries Of. 1H nuclear magnetic resonance spectroscopy-based studies of the metabolism of food-borne carcinogen 2-amino-3-methylimidazo[4,5-f]quinoline by human intestinal microbiota. Acetamide- a metabolite of metronidazole formed by the intestinal flora. Alterations in the intestinal glycocalyx and bacterial flora in response to oral indomethacin. Baicalin, the pr...

pharmacomicrobiomics.com pharmacomicrobiomics.com

PharmacoMicrobiomics

http://www.pharmacomicrobiomics.com//view/chemical

PharmacoMicrobiomics: The Drug-Microbiome Portal. How Bugs Modulate Drugs? Launched on 11/11/11; Current Release 1.3 (21 March 15). View All Entries Of. The PharmacoMicrobiomics Web Portal is an EgyBio. The National Center for Biotechnology Information. The Comparative Toxicogenomics Database. 2011 PharmacoMicrobiomics.com - How Bugs Modulate Drugs? Intake 31, Graduation Project, Open Source Technologies Department, Information Technology Institute ( ITI.

pharmacomicrobiomics.com pharmacomicrobiomics.com

PharmacoMicrobiomics

http://www.pharmacomicrobiomics.com/publications

PharmacoMicrobiomics: The Drug-Microbiome Portal. How Bugs Modulate Drugs? Launched on 11/11/11; Current Release 1.3 (21 March 15). PharmacoMicrobiomics or how bugs modulate drugs: an educational initiative to explore the effects of human microbiome on drugs. PDF. Our full text version without the journal copyediting or formatting). The PharmacoMicrobiomics Web Portal is an EgyBio. The National Center for Biotechnology Information. The Comparative Toxicogenomics Database.

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PharmacoMicrobiomics

http://www.pharmacomicrobiomics.com//view/relation

PharmacoMicrobiomics: The Drug-Microbiome Portal. How Bugs Modulate Drugs? Launched on 11/11/11; Current Release 1.3 (21 March 15). View All Entries Of. Gut microbiota normally hydrolyze baicalin into its corresponding aglycone baicalein . ( Read more. Altered concentration of E. lentum between populations has been correlated . ( Read more. Gut microbiota metabolize chlorogenic acid in to 3- hydroxy cinnamic . ( Read more. Digoxin toxicity might be due to reduction in Digoxin reduction . ( Read more.

mseqdr.org mseqdr.org

MToolBox Pipeline @ MSeqDR

https://mseqdr.org/mtoolbox.php

A,rs113994099, 1:12031905.12081904, POLG, ENSG00000162572, MT-ND1, RCV000000015.1, Myopathy, MELAS. Single entry only! Variant: C" 1:g.10042757T C. MToolBox Pipeline @ MSeqDR. Option 1: Copy and Paste Your FASTA Input Here. Option 2: Upload Input File. Drag and Drop fasta (single sequence fasta only), fastq, fastq.gz, bam, sam file here, file size up to 50MB. Check Samples to Analyze:. 1 2016-08-26-02-50-2467 input.fasta. 2 data88.sorted.bam. 5 2016-08-13-21-19-6985 input.fasta. 10,217.2 KB. 300,630....

mseqdr.org mseqdr.org

MSeqDR/GEM.app Tutorial at UMDF Mitochondrial Medicine 2015

https://mseqdr.org/umdf15.php

A,rs113994099, 1:12031905.12081904, POLG, ENSG00000162572, MT-ND1, RCV000000015.1, Myopathy, MELAS. Single entry only! Variant: C" 1:g.10042757T C. MSeqDR/GEM.app Tutorial at UMDF Mitochondrial Medicine 2015. Over 50 clinicians, scientists and genetic counselors, from over worldwide institutes and hospitals, attended the workshop. Please send us your comments by filling out the Online Survey. Thank you for your time and participation! The MSeqDR-GEM.app-GeneMatcher team.

mseqdr.org mseqdr.org

MSeqDR Tutorials and Examples

https://mseqdr.org/tutorial.php

A,rs113994099, 1:12031905.12081904, POLG, ENSG00000162572, MT-ND1, RCV000000015.1, Myopathy, MELAS. Single entry only! Variant: C" 1:g.10042757T C. MSeqDR Tutorials and Examples. The first paper describing the MSeqDR Project is accepted for publication: Pubmed 25542617. Mol Genet Metab. 2014 Dec 4. pii: S1096-7192(14)00377-1. doi: 10.1016/j.ymgme.2014.11.016. Introduction to using MSeqDR: swf. Format. Tutorial was prepared by Dr. Marni Falk, 20 min. Hands-on exercises and walk throughs. About the webpage...

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The Comparative Toxicogenomics Database | CTD

Illuminating how chemicals affect human health. CTD is a robust, publicly available database that aims to advance understanding about how environmental exposures affect human health. More…. What human diseases are associated with a gene/protein. What human diseases are associated with a chemical. What genes/proteins interact with a chemical. What chemicals interact with a gene/protein. What references report a chemical–gene/protein interaction. What cellular functions (GO terms) are affected by a chemical.

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CTD-BAU s.r.o.: Stavební řezivo, Hoblovaný program, Palubky, Podlahové a obkladové lišty,. OSB desky, MFP desky, Terasová prkna, Palivové dřevo, Spojovácí materiál,. Cementotřískové desky Amroc, Zahradní domky a chatky, Pergoly, altany, garážová stání. Pergoly, altány, garážová stání. CTD-BAU s.r.o. Vás vítá! Pro drobné venkovní stavby, podlahy či záklopy využijete vodě odolný multifunkční dřevotřískový panel MFP. Samozřejmostí v nabídce je i spojovací a kotvící materiál. Po náročné práci budete jistě rá...

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