curie.utmb.edu

Protein-Protein Interaction Server

Web server to predict functionally important amino acids on protein surface crucial for protein function and protein-protein interaction. Web server to predict conformational epitopes on antigen protein using peptides selected from phage display experiments. Web server to predict B-Cell epitope using antigen structure alone. Web server for calculation of solvent accessible surface area of macromolecules. Web server to predict cross-reactivity between allergenic proteins. Reports to the State.

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Protein-Protein Interaction Server | curie.utmb.edu Reviews

<META> DESCRIPTION

Web server to predict functionally important amino acids on protein surface crucial for protein function and protein-protein interaction. Web server to predict conformational epitopes on antigen protein using peptides selected from phage display experiments. Web server to predict B-Cell epitope using antigen structure alone. Web server for calculation of solvent accessible surface area of macromolecules. Web server to predict cross-reactivity between allergenic proteins. Reports to the State.

<META> KEYWORDS

1 Protein-Protein Interaction Server

2 InterProSurf

3 Interface residue

4 Prediction of Protein Interface

5 Binding Sites

6 Dimmer

7 Trimer

8 Protein Interaction

9 Functional site

10 hot spot

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Protein-Protein Interaction Server | curie.utmb.edu Reviews

https://curie.utmb.edu

Web server to predict functionally important amino acids on protein surface crucial for protein function and protein-protein interaction. Web server to predict conformational epitopes on antigen protein using peptides selected from phage display experiments. Web server to predict B-Cell epitope using antigen structure alone. Web server for calculation of solvent accessible surface area of macromolecules. Web server to predict cross-reactivity between allergenic proteins. Reports to the State.

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curie.utmb.edu

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Protein Protein Interaction Server: InterProSurf

http://curie.utmb.edu/prosurf.html

User can use any four letter Protein Data Bank ID to find interface residues in any protein complex. Please use "PDB Complex" option. User also can upload their protein complex to find interface residues. Please use "User Complex" option. Predict interacting residues on a monomeric protein surface using patch analysis. Predict interacting residues on a monomeric protein surface using cluster analysis. The University of Texas Medical Branch. Please Review Our Site Policies and Required Links.

2

BCEP: B-cell Epitope Prediction Server

http://curie.utmb.edu/B-Cell.html

B-cell Epitope Prediction Server (BCEP). Prediction of B-cell epitopes using antigen 3D structure. For prediction purpose, please use a monomer structure, select patch size and solvent accessible surface area threshold. You can use standard PDB id or one word for your pdbfile name. Upload a PDB file:. Specify PDB chain ID:. PDB chain A-Z,a-z,0-9 or white space. In case of error please send an e-mail to ssnegi AT. Example input from B-cell Epitope Prediction Server:. Reports to the State.

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http://curie.utmb.edu/mpack

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GetArea

http://curie.utmb.edu/getarea.html

Calculation of Solvent Accessible Surface Areas, Atomic Solvation Energies and Their Gradients for Macromolecules. Sealy Center for Structural Biology, University of Texas Medical Branch, Galveston, TX 77555. Can be directly accessed through this form. An on-line manual. Is available. Atomic coordinates should be supplied in PDB format. Please cite reference [1] in publications that use our service. Comments are welcome, please mail them to ssnegiATutmb.edu. Please select your PDB file:. This is a defaul...

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molbiol-tools.ca

Online Analysis Tools - Protein Tertiary Structure

http://www.molbiol-tools.ca/Protein_tertiary_structure.htm

Sites are offered for calculating and displaying the 3-D structure of oligosaccharides and proteins. With the two protein analysis sites the query protein is compared with existing protein structures as revealed through homology analysis. Principles of Protein Structure, Comparative Protein Modelling and Visualization by N. Guex and M.C. Peitsch (GlaxoWellcome, Switzerland) is. To obtain PDB coordinates for a protein of your interest, go to the. Or Molecules to Go. An automated comparative protein modell...

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Protein-Protein Interaction Server

Web server to predict functionally important amino acids on protein surface crucial for protein function and protein-protein interaction. Web server to predict conformational epitopes on antigen protein using peptides selected from phage display experiments. Web server to predict B-Cell epitope using antigen structure alone. Web server for calculation of solvent accessible surface area of macromolecules. Web server to predict cross-reactivity between allergenic proteins. Reports to the State.

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