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Disorder

Database of Disordered Protein Predictions. A community resource for pre-computed disorder predictions on a large library of proteins from completely-sequenced genomes. Goals of the database include making statistical comparisons of the various prediction methods freely available to the prediction community, as well as facilitating biological investigation of the disordered protein space. 10,429,761 sequences. In 1,765 genomes. From 1,256 distinct species. Search for sequences of interest based on. As we...

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Disorder | d2p2.pro Reviews

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Database of Disordered Protein Predictions. A community resource for pre-computed disorder predictions on a large library of proteins from completely-sequenced genomes. Goals of the database include making statistical comparisons of the various prediction methods freely available to the prediction community, as well as facilitating biological investigation of the disordered protein space. 10,429,761 sequences. In 1,765 genomes. From 1,256 distinct species. Search for sequences of interest based on. As we...

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Disorder | d2p2.pro Reviews

https://d2p2.pro

Database of Disordered Protein Predictions. A community resource for pre-computed disorder predictions on a large library of proteins from completely-sequenced genomes. Goals of the database include making statistical comparisons of the various prediction methods freely available to the prediction community, as well as facilitating biological investigation of the disordered protein space. 10,429,761 sequences. In 1,765 genomes. From 1,256 distinct species. Search for sequences of interest based on. As we...

INTERNAL PAGES

d2p2.pro

1

About - Genomes

http://www.d2p2.pro/about/genomes

An exhaustive list of the genomes available in the database at this time. Click on the name of any species in the left hand column to see summary statistics of its protein content and download the FASTA sequence file for your own use. Where possible we also provide live information from Wikipedia about this species. Search Instead ». Eukaryota » Metazoa » Chordata » Craniata » Vertebrata » Euteleostomi » Mammalia » Eutheria » Euarchontoglires » Primat...Eukaryota » Metazoa » Chordata » ...Eukaryota &raqu...

2

Disorder

http://www.d2p2.pro/about/predictors

Details on the predictors included in the database, both protein structure and disorder. Algorithm authorship is stated where necessary, as well as a contact details for all data providers. Search Instead ». This page contains brief descriptions of the predictors included in the D. If you have any specific comments or issues with a given predictors assignments a point of contact for that data provision is linked. For more general enquiries or comments please contact Matt Oates. Li,X, Romero,P. Genome Inf...

3

About - Database

http://www.d2p2.pro/about/database

Search Now ». Please cite the following if you make use of D. As well as papers for any original prediction methods used. Oates,M.E., Romero,P., Ishida,T., Ghalwash,M., Mizianty,M.J., Xue,B., Dosztányi,S., Uversky,V.N., Obradovic,Z., Kurgan,L., Dunker,A.K., Gough,J. (2013). "D2P2: Database of Disordered Protein Predictions.". D1):D508-D516 DOI: 10.1093/nar/gks1226. Website, and database analysis. VLXT and VSL2b predictions. Espritz and IUPred-L predictions. VLXT and VSL2b predictions.

4

Downloads

http://www.d2p2.pro/download

Is the corresponding author for the database's website and dump. For specific predictors please contact the corresponding author listed on our about predictors. Page For downloading specific genome content and sequences of interest please use the " Browse. Feature to find your sequences then hit the download button at the top of the results table. All of the dump files below can be loaded into your own MySQL database. Web/database code available from GitHub. Click here for the full SQL database dump.

5

About - Database

http://www.d2p2.pro/about

An introduction to what you can see and do with the website. Search Instead ». Heading), by predictor (via the download. Heading), or for the complete set (via download. What is a disordered protein? All states of TSP9 PDB:2fft. A single stable helix ( black. Seperates two disordered segments (blue and green-red) of the Thylakoid soluble phosphoprotein TSP9. All known states from NMR are shown super imposed. Uversky,V.N., Gillespie,J.R., Fink,A.L. (2000) Why are natively unfolded ...Uversky,V.N. ...Iakou...

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bioinformatics.bris.ac.uk

Software - Computational Genomics Group

http://www.bioinformatics.bris.ac.uk/software.html

The Mogrify resource predicts how to trans-differentiation from any human cell type to any other human cell typeby perturbing the transcriptional network. Mogrify includes all cell types from the FANTOM5. Database contains assignments of protein domains of known structures to all completely sequenced genomes. The library of hidden Markov models and the software required to run the SUPERFAMILY assignment procedure is available from the downloads page. There is a very low traffic mailing list. A community ...

bioinformaticsdigitallibrary.blogspot.com

iBIRA: Integrated Bioinformatics Information Resource Access : Bioinformatics Databases

http://bioinformaticsdigitallibrary.blogspot.com/2013/05/bioinformatics-databases.html

IBIRA: Integrated Bioinformatics Information Resource Access. Thursday, May 23, 2013. Bioinformatics Databases Developed in 2012. A system for annotating alternative splice isoforms. A repository of bacterial small regulatory RNA. Cell line expression profiles by microarray analysis. Transcriptional regulation of lncRNA and microRNA genes from ChIP-Seq data. Chimeric RNAs of two or more different transcripts. Images, videos and animations of various cell types from diverse organisms. Domain structure pre...

bioinformaticsdigitallibrary.blogspot.com

iBIRA: Integrated Bioinformatics Information Resource Access : 05/01/2013 - 06/01/2013

http://bioinformaticsdigitallibrary.blogspot.com/2013_05_01_archive.html

IBIRA: Integrated Bioinformatics Information Resource Access. Thursday, May 23, 2013. Most Popular Bioinformatics Journals. Proceedings of the National Academy of Sciences of the United States of America. Molecular Systems Biology (Nature). Journal of Proteome Research. Journal of Computer-Aided Molecular Design. Proteins Structure Function and Genetics. Journal of Biomedical Informatics. Series on Advances in Bioinformatics and Computational Biology. Biochemical and Biophysical Research Communications.

nar.oxfordjournals.org

D2P2: database of disordered protein predictions

http://nar.oxfordjournals.org/content/41/D1/D508.full

View Current Issue (Volume 44 Issue 14 19 August 2016). Database of disordered protein predictions. Matt E. Oates. Marcin J. Mizianty. Vladimir N. Uversky. Department of Computer Science, University of Bristol, Bristol BS8 1UB, UK,. Bristol Centre for Complexity Sciences, University of Bristol, Bristol BS8 1TR, UK,. Center for Computational Biology and Bioinformatics, Indiana University, Indianapolis, IN 46202-5122, USA,. Department of Molecular Medicine, University of South Florida, Tampa, FL MDC07, USA,.

bioinformatics.bristol.ac.uk

Software - Computational Genomics Group

http://www.bioinformatics.bristol.ac.uk/software.html

The Mogrify resource predicts how to trans-differentiation from any human cell type to any other human cell typeby perturbing the transcriptional network. Mogrify includes all cell types from the FANTOM5. Database contains assignments of protein domains of known structures to all completely sequenced genomes. The library of hidden Markov models and the software required to run the SUPERFAMILY assignment procedure is available from the downloads page. There is a very low traffic mailing list. A community ...

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Disorder

Database of Disordered Protein Predictions. A community resource for pre-computed disorder predictions on a large library of proteins from completely-sequenced genomes. Goals of the database include making statistical comparisons of the various prediction methods freely available to the prediction community, as well as facilitating biological investigation of the disordered protein space. 10,429,761 sequences. In 1,765 genomes. From 1,256 distinct species. Search for sequences of interest based on. As we...

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