dankolab.org

Danko Lab

The Baker Institute for Animal Health at Cornell University. We study how gene expression patterns are encoded in Metazoan DNA sequence, and how these patterns contribute to evolution, development, and disease. We use a variety of computational methods from statistical modeling and machine learning, in combination with molecular approaches to prepare next-generation sequencing libraries (e.g. GRO-seq. Jan 29th, 2018. Sept 1st, 2017. Aug 20th, 2017. July 27th, 2016. Our comment on Lesch et. al.

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The Baker Institute for Animal Health at Cornell University. We study how gene expression patterns are encoded in Metazoan DNA sequence, and how these patterns contribute to evolution, development, and disease. We use a variety of computational methods from statistical modeling and machine learning, in combination with molecular approaches to prepare next-generation sequencing libraries (e.g. GRO-seq. Jan 29th, 2018. Sept 1st, 2017. Aug 20th, 2017. July 27th, 2016. Our comment on Lesch et. al.

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2 research

3 team

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6 find us

7 research interests

8 rna seq

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Danko Lab | dankolab.org Reviews

https://dankolab.org

The Baker Institute for Animal Health at Cornell University. We study how gene expression patterns are encoded in Metazoan DNA sequence, and how these patterns contribute to evolution, development, and disease. We use a variety of computational methods from statistical modeling and machine learning, in combination with molecular approaches to prepare next-generation sequencing libraries (e.g. GRO-seq. Jan 29th, 2018. Sept 1st, 2017. Aug 20th, 2017. July 27th, 2016. Our comment on Lesch et. al.

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dankolab.org

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Danko Lab

http://www.dankolab.org/index.html

The Baker Institute for Animal Health at Cornell University. We study how gene expression patterns are encoded in Metazoan DNA sequence, and how these patterns contribute to evolution, development, and disease. We use a variety of computational methods from statistical modeling and machine learning, in combination with molecular approaches to prepare next-generation sequencing libraries (e.g. GRO-seq. July 27th, 2016. Our comment on Lesch et. al. Is now online in Nature Genetics. June 15th, 2016.

2

Danko Lab

http://www.dankolab.org/Team.html

Charles is an assistant professor at the Baker Institute and the College of Veterinary Medicine, Cornell University. His research is focused on understanding gene regulation using methods from molecular biology and genetics, computer science, statistics, and machine learning. Learn about active research projects in the Research page. Croucher Foundation Graduate Fellow. Tinyi is a graduate student in the Computational Biology program at Cornell and a scholar of the Croucher Foundation. Andre arrived at C...

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Danko Lab

http://www.dankolab.org/Publications.html

CTCF- and Pitx2-dependent asymmetry mirrors embryonic gut laterality. Measuring elongation rates using GRO-seq. Ultrastructural changes in canine ARVC heart tissue. Khoisan and Bantu genome sequencing and analysis. Publications ( * denotes equal contribution. Danko lab members underlined. Initiation of mtDNA transcription is followed by pausing, and diverge across human cell types and during evolution. Blumberg A, Rice EJ. Kundaje A, Danko CG. Mahat DB, Kwak H, Booth GT, Jonkers IH, Danko CG. GAGA Factor...

4

Danko Lab

http://www.dankolab.org/Software.html

Parse TF motifs from public databases, read into R, and scan using 'rtfbs'. Preprint: bioRxiv. Detection of active regulatory elements (promoters and enhancers) using GRO-seq and PRO-seq data. Segment genomic data using hidden Markov models. Updated and maintained by the Kraus lab. Easy extraction of individual probes in Affymetrix tiling arrays. R package for fitting and evaluating support vector machines (SVMs) using GPU hardware. e1071 compatible. The Baker Institute for Animal Health. Ithaca, NY 14853.

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stemcell.cornell.edu

Cornell University Stemcell Project

https://www.stemcell.cornell.edu/scp-faculty.cfm

Our program consists of over 30 Cornell laboratories engaged in a broad range of stem cell research. We strive to promote the synergistic interactions among investigators, support development of essential core facilities and facilitate training and educational activities. Supported in part by NYSTEM and private donations from people just like you, Cornell Stem Cell Program could not continue without your support. Contribute today! SC Modeling and Phenotyping Core. Stem Cells and Cancer Journal Club.

cancer.cornell.edu

Our Faculty: Cancer@Cornell

http://cancer.cornell.edu/faculty.html

Viral oncogenesis/Viral hemorrhagic septicemia. Pharmacology and Chemical biology/signaling cues that regulate cell growth, differentiation and development. Epigenetics and Reproductive Biology. Obesity, type 2 diabetes and bariatric surgery. How gene expression patterns contribute to cancer development and progression. Medical oncology/hen ovarian cancer. Associate Professor and Medical Director Specialties III - Cornell University Hospital for Animals. Cell polarity in development and tumorigenesis.

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Danko Lab

The Baker Institute for Animal Health at Cornell University. We study how gene expression patterns are encoded in Metazoan DNA sequence, and how these patterns contribute to evolution, development, and disease. We use a variety of computational methods from statistical modeling and machine learning, in combination with molecular approaches to prepare next-generation sequencing libraries (e.g. GRO-seq. Jan 29th, 2018. Sept 1st, 2017. Aug 20th, 2017. July 27th, 2016. Our comment on Lesch et. al.

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