daslab.stanford.edu daslab.stanford.edu

daslab.stanford.edu

DAS LAB + Stanford Biochemistry Department + Stanford University

Our lab seeks an agile and predictive understanding of how RNAs code for information processing and replication in living systems. We are creating new computational and chemical tools to enable the precise modeling and design of these RNAs.

http://daslab.stanford.edu/

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DAS LAB + Stanford Biochemistry Department + Stanford University | daslab.stanford.edu Reviews

https://daslab.stanford.edu

Our lab seeks an agile and predictive understanding of how RNAs code for information processing and replication in living systems. We are creating new computational and chemical tools to enable the precise modeling and design of these RNAs.

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daslab.stanford.edu daslab.stanford.edu
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DAS LAB + Stanford Biochemistry Department + Stanford University

https://daslab.stanford.edu/resources

Workflows for modeling RNA structure from sequence, including links to all relevant packages and documentation, are available on RiboKit. For RNA chemical mappers. Browse curated, quantitative data sets on 100,000 RNAs at the RNA Mapping Database. Create RNAs for nanomedicine at Eterna.

2

DAS LAB + Stanford Biochemistry Department + Stanford University

https://daslab.stanford.edu/publications

Search for papers from the Das Lab on PubMed. RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme". In press, epub available. Parks, J.W., Kappel, K., Das, R., and Stone, M.D. (2017) " Single-molecule FRET-Rosetta reveals RNA structural rearrangements during human telomerase catalysis. 23 (2) : 175 - 188 Paper. Tian, S., Das, R. (2017) " Primerize-2D: automated primer design for RNA multidimensional chemical mapping. In press, epub available. : 1 - 2 Paper. Cordero, P...

3

DAS LAB + Stanford Biochemistry Department + Stanford University

https://daslab.stanford.edu/news

November 18, 2016. Congratulations to Kalli Kappel for winning a travel award to the 2017 Biophysical Society annual meeting, in New Orleans, LA. She will present her work on "Blind predictions of RNA/protein relative binding affinities". September 19, 2016. Siqi Tian successfully defended his Ph.D. thesis on "Robust Validation of RNA Secondary Structure and Ensembles through Multidimensional Chemical Mapping". On September 19, 2016. August 15, 2016. July 01, 2016. Get ready for Eternacon 2016! Dr Joe Ye...

4

DAS LAB + Stanford Biochemistry Department + Stanford University

https://daslab.stanford.edu/people

SGF Fellow and NSF Fellow. Experimental lead, EteRNA. High School Summer Student.

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hongikeng.com hongikeng.com

People — The Joint Initiative for Metrology in Biology

http://www.hongikeng.com/community.html

MAKING THE MEASUREMENTS THAT MATTER. NIST Measurement Experts, Stanford Innovators,. JIMB LEADERSHIP AND ADMINISTRATION. Executive Committee, JIMB,. Executive Committee, JIMB,. Leader, California Team, NIST Genome-Scale. Executive Committee, JIMB,. Pathology and of Genetics. Laurie E. Locascio. Exec Committee (ex-officio), JIMB,. Director, Material Measurement. Executive Committee, JIMB,. Leader, NIST Genome-Scale. Measurements Group, Consulting Professor of Bioengineering and of Pathology. Associate Pro...

primerize.stanford.edu primerize.stanford.edu

Primerize: Primer Design for PCR Assembly

https://primerize.stanford.edu/demo_1d

Section #1: Result Retrieval. Section #2: Single Assembly. Section #3: Mutate-and-Map Plates. Section #4: Mutation/Rescue Sets. Section #1: DNA Template Design. Section #2: IDT Oligo Ordering. Section #3: PCR Assembly Protocol. Section #4: In Vitro. Section #5: Massively Parallel Preparation. Please enter your sequence below: valid nucleotides only (A, C, G, T, and U); and at least 60. Your sequence is longer than 500. Written down for retrieval. Your sequence is longer than 1000.

primerize.stanford.edu primerize.stanford.edu

Primerize: Primer Design for PCR Assembly

https://primerize.stanford.edu/license

Section #1: Result Retrieval. Section #2: Single Assembly. Section #3: Mutate-and-Map Plates. Section #4: Mutation/Rescue Sets. Section #1: DNA Template Design. Section #2: IDT Oligo Ordering. Section #3: PCR Assembly Protocol. Section #4: In Vitro. Section #5: Massively Parallel Preparation. Please read the following LICENSE carefully. To continue downloading source code, you must accept the agreement. LICENSE for Primerize, v1.3. 5 You agree not to use (i) Stanford's name or other trademarks, or (ii) t...

primerize.stanford.edu primerize.stanford.edu

Primerize: Primer Design for PCR Assembly

https://primerize.stanford.edu/tutorial

Section #1: Result Retrieval. Section #2: Single Assembly. Section #3: Mutate-and-Map Plates. Section #4: Mutation/Rescue Sets. Section #1: DNA Template Design. Section #2: IDT Oligo Ordering. Section #3: PCR Assembly Protocol. Section #4: In Vitro. Section #5: Massively Parallel Preparation. This tutorial walks you through the basics of website interface, and explains parameters and results. Hover mouse to the. We have examples for new users, see. For further questions, please feel free to. The source c...

dna20.molecular-robotics.org dna20.molecular-robotics.org

Speakers | DNA20

http://dna20.molecular-robotics.org/speakers

DNA Computing and Molecular Programming. University of California San Francisco. Nanoscale Construction with DNA. Cristian S. Calude. The University of Auckland. The Quest for Quantum Randomness. We survey recent results regarding the quality of quantum randomness based on the notion of value indefinite observable. We show that the outcome of a measurement of such an observable is maximally unpredictable which implies that quantum randomness is highly incomputable. Cristian S. Calude. DNA programs execut...

rmdb.stanford.edu rmdb.stanford.edu

RMDB: RNA Mapping DataBase

https://rmdb.stanford.edu/deposit/validate

Chemical Mapping Data of. Use this form to validate that a file that describes RNA chemical footprinting experiments follows the standards. Other consistency checks such as sequence and data agreement are also made. Specify an RMDB ID. Designed, built and managed by members of the. Database license under CC0. Site contents under CC-BY-SA-4.0.

rmdb.stanford.edu rmdb.stanford.edu

RMDB: RNA Mapping DataBase

https://rmdb.stanford.edu/deposit/submit

Chemical Mapping Data of. Designed, built and managed by members of the. Database license under CC0. Site contents under CC-BY-SA-4.0.

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DasLab

Rhiju Das Lab @ Stanford Biochemistry. Our lab seeks an agile and predictive understanding of how RNAs code for information processing and replication in living systems. We are creating new computational and chemical tools to enable the precise modeling and design of these RNAs. We strive to predict how biomolecule sequence code for their behavior. Best Inference Engine for RNA Structure. LIkelihood-based Fits of Folding Transitions. Analysis of 2D signal in mutational profiling (MaP) sequencing data.

daslab.seas.harvard.edu daslab.seas.harvard.edu

DASlab – Data Systems Laboratory @ Harvard SEAS

Designing data systems for the big data era. More news on Twitter. Algorithms, data structures, architectures. Are in the critical path of everything we do today. At DASlab we design systems for evolving hardware and workloads that can handle the challenges of the big data era. We focus on both traditional and emerging application scenarios, being a member of the databases community. Check out some of our main projects below! DASlab is part of the. Database systems research community. At DASlab, we focus...

daslab.stanford.edu daslab.stanford.edu

DAS LAB + Stanford Biochemistry Department + Stanford University

Our lab seeks an agile and predictive understanding of how RNAs code for information processing and replication in living systems. We are creating new computational and chemical tools to enable the precise modeling and design of these RNAs.

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DASLABOR - der Experimentalraum. HINWEIS: Mike Spike Froidl. Freitag 31. Oktober 2014 um 20 Uhr. Mit hassgekochten Filmen zum Titel. Ich male keine lahmen verrätselten Bilder wie Kollege Neo Rauch. Meine Malerei ist Angriff und Mahnung zugleich. In der Galerie Filter. Elbestraße 37 Ecke Sonnenallee. Dewikipedia.org/wiki/Mike Spike Froidl. Zeichnung von Silvio Streddi. Die Weisheit und Erkenntnis. Die Freiheit zu Denken und zu Handeln. Aber vor allem wollen wir Räume.