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Department of Biomedical and Health Informatics - Department of Biomedical and Health Informatics

The Department of Biomedical and Health Informaticss (DBHi) is an innovative, interdisciplinary and academically focused group that facilitates the utilization of biomedical information. DBHi's mission is to provide the expertise and infrastructure needed to maximize the value of information relevant to all biomedical research, education and clinical activities occurring at Children's Hospital. This endeavor blends the disciplines of bioinformatics and clinical information, which themselves require excellen

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Department of Biomedical and Health Informatics - Department of Biomedical and Health Informatics | dbhi.chop.edu Reviews

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The Department of Biomedical and Health Informaticss (DBHi) is an innovative, interdisciplinary and academically focused group that facilitates the utilization of biomedical information. DBHi's mission is to provide the expertise and infrastructure needed to maximize the value of information relevant to all biomedical research, education and clinical activities occurring at Children's Hospital. This endeavor blends the disciplines of bioinformatics and clinical information, which themselves require excellen

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Department of Biomedical and Health Informatics - Department of Biomedical and Health Informatics | dbhi.chop.edu Reviews

https://dbhi.chop.edu

The Department of Biomedical and Health Informaticss (DBHi) is an innovative, interdisciplinary and academically focused group that facilitates the utilization of biomedical information. DBHi's mission is to provide the expertise and infrastructure needed to maximize the value of information relevant to all biomedical research, education and clinical activities occurring at Children's Hospital. This endeavor blends the disciplines of bioinformatics and clinical information, which themselves require excellen

INTERNAL PAGES

dbhi.chop.edu

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Applications - Department of Biomedical and Health Informatics

http://dbhi.chop.edu/applications.html

Harvest Program: Integrated Research Databases. Care Assistant Program: EHR Prompts, Interventions, and Decision Support. Asthma Clinical Decision Support. Research Recruitment Prompts in Primary Care. REDCap Program: User-Enabled Data Management. Proband- Pedigrees Made Simple. Mobile Health Application Development Program. Clinical Trial Management Systems. Laboratory Information Management Systems. The Harvest Program: Integrated Research Databases. Dynamic querying engine with visualizations. The Car...

2

Bioinformatics - Department of Biomedical and Health Informatics

http://dbhi.chop.edu/bioinformatics.html

The Bioinformatics group of the Department of Biomedical and Health Informatics develops and applies its extensive analysis capabilities to enable, enhance, and empower research and clinical application at The Children's Hospital of Philadelphia. Next Generation Sequencing/Whole Genome Array Analysis. DBHi has led efforts in the analysis of whole genome arrays by developing a strong infrastructure and knowledgebase (e.g., CNV Database. SNP and haplotype detection. Linkage to EHR-based phenotypes. Interac...

3

CHOP's First Clinical Informatics Fellows Join DBHi - Department of Biomedical and Health Informatics

http://dbhi.chop.edu/education-news/423-chop-s-first-clinical-informatics-fellows-join-dbhi.html

CHOP's First Clinical Informatics Fellows Join DBHi. Two new clinical informatics fellows will begin their training with the Department of Biomedical and Health Informatics (DBHi) July 1, 2015. Marc Tobias, MD. Naveen Muthu, MD. The Accreditation Council for Graduate Medical Education (ACGME) recently granted "Initial Accreditation" to the CHOP Clinical Informatics Fellowship. This two-year program includes both didactic and rotational training where the Clinical Informatics Fellow can acquire a comp...

4

Application Development - Department of Biomedical and Health Informatics

http://dbhi.chop.edu/index.php/application-development.html

DBHi brings together a variety of data integration analysts and programmers to carry out grant-funded research and development of novel software tools for data-intensive biomedical research. Harvest" Program: Integrated Research Databases. Integration of genomic, imaging, research, and clinical endpoints. Dynamic query engine with visualizations. Hypothesis-driven exploration of data. Care Assistant" Program: EHR Prompts, Interventions, and Decision Support. Research recruitment prompts in EHR. DBHi's vi...

5

News - Department of Biomedical and Health Informatics

http://dbhi.chop.edu/news-main.html

Career Opportunities with the Department of Biomedical and Health Informatics. DBHi is looking for talented informatics professionals for our current available positions. DBHI Data Team Science Addresses Assessment and Model Selection for Predictive Tasks in Biomedicine. Article by DBHi's Ting Qian and Aaron Masino published in PLOS One. Tan Lab Builds Database for Gene Switches. Interactive database, EnhancerAtlas contains an atlas of 2,534,123 enhancers for 105 cell/tissue types. PHRASE was developed b...

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harvest.research.chop.edu

Harvest | Articles

http://harvest.research.chop.edu/articles

At The Children's Hospital of Philadelphia Research Institute. We have a lot to talk about. We would, however, like to know what. In the community would like to learn more about. Let us know in the chatroom. Or send us an email at info@harvest.io. With your topics in mind. Thanks! Setting Up a Development Environment. Middot; December 10 2014. Navigate to the OpenMRS directory and switch to the demo branch. Adding an app to your Harvest instance. Middot; October 30 2014. Custom Controls in Cilantro.

harvest.research.chop.edu

Harvest | Resources

http://harvest.research.chop.edu/resources

At The Children's Hospital of Philadelphia Research Institute. Resources Videos, publications, press, and other resources. CHOP’s Harvest Toolkit Offers Innovative Data Discovery Resource for Biomedical Researchers. Harvest: an open platform for developing web-based biomedical data discovery and reporting applications. Journal of the American Medical Informatics Association (JAMIA). AudGenDB and Harvest - Origins of a Modern Web-Based Biomedical Data Discovery Stack. Longitudinal Pediatric Data Resource.

bioinfo-core.org

BioWiki:Community portal - BioWiki

http://www.bioinfo-core.org/index.php/BioWiki:Community_portal

To add your facility, please link to a description you have on the internet or add a page to this wiki. Please follow the Core page template. List of Bioinformatics Core Facilities. University of Tübingen (Germany). Max Planck Institiute of Immunobiology and Epigenetics, Freiburg (Germany). University of Virginia, Charottesville VA (USA). Montana State University (USA). Lerner Research Institute, Cleveland Clinic, OH (USA). Bioinformatics Analysis Core (Genomics and Proteomics Core Laboratories). CPGR, U...

share.chop.edu

Log In - Wiki.CHOP

https://share.chop.edu/spacedirectory/view.action

Skip to header menu. Skip to action menu. Skip to quick search. Log in to Confluence. Log in using your CHOP active directory credentials. By accessing Wiki.CHOP you agree to the Terms of Use. Welcome to The Children's Hospital of Philadelphia's wiki collaborative environment, powered by Atlassian Confluence. The wiki as used here at CHOP represents expansion of a collaborative environment first developed by the Department of Biomedical and Health Informatics (DBHI). What can the CHOP wiki do for my team?

harvest.research.chop.edu

Harvest | Download

http://harvest.research.chop.edu/download

At The Children's Hospital of Philadelphia Research Institute. Download .and setup a new Harvest application. All releases and release notes are posted on the repos releases page on GitHub. Harvest requires Python 2.6 or 2.7 and Unix-based operating system (OS X, Linux, BSD). Most systems come with Python pre-installed or can be easily installed uses the operating systems package manager. For general download and install instructions, visit python.orgs download page. The output should look something like:.

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