dbptm.mbc.nctu.edu.tw

dbPTM

DbPTM 10th Year Anniversary. An Integrated Resource for Protein Post-Translational Modifications. Drug binding-associated PTM sites. The Statistics of PTMs. Move to the Statistics Page. Modified residue Glycosylation Lipidation Crosslink. Structural characterization of PTM substrate sites. The Benchmark dataset of PTMs. ex: O-Glycosylation. Reconstruct the PTM Regulatory Network. ex: O-Glycosylation. Welcome to dbPTM 10th Year Anniversary. Integrative Platform for PTM Analysis. Large-scale identification...

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dbPTM | dbptm.mbc.nctu.edu.tw Reviews

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DbPTM 10th Year Anniversary. An Integrated Resource for Protein Post-Translational Modifications. Drug binding-associated PTM sites. The Statistics of PTMs. Move to the Statistics Page. Modified residue Glycosylation Lipidation Crosslink. Structural characterization of PTM substrate sites. The Benchmark dataset of PTMs. ex: O-Glycosylation. Reconstruct the PTM Regulatory Network. ex: O-Glycosylation. Welcome to dbPTM 10th Year Anniversary. Integrative Platform for PTM Analysis. Large-scale identification...

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2 introduction

3 statistics

4 browse

5 download

6 resource

7 all resource

8 databases

9 multiple ptm

10 glycosylation

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welcome,introduction,statistics,browse,download,resource,all resource,databases,multiple ptm,glycosylation,n glycosylation,o glcnaclation,o glycosylation,gpi lipidanchormodified,n acetylation,lysineacetylation,methylation,myristoylation,phosphorylation

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dbPTM | dbptm.mbc.nctu.edu.tw Reviews

https://dbptm.mbc.nctu.edu.tw

DbPTM 10th Year Anniversary. An Integrated Resource for Protein Post-Translational Modifications. Drug binding-associated PTM sites. The Statistics of PTMs. Move to the Statistics Page. Modified residue Glycosylation Lipidation Crosslink. Structural characterization of PTM substrate sites. The Benchmark dataset of PTMs. ex: O-Glycosylation. Reconstruct the PTM Regulatory Network. ex: O-Glycosylation. Welcome to dbPTM 10th Year Anniversary. Integrative Platform for PTM Analysis. Large-scale identification...

INTERNAL PAGES

dbptm.mbc.nctu.edu.tw

1

dbPTM

http://dbptm.mbc.nctu.edu.tw/browse.php

Drug binding-associated PTM sites. Four external biological databases related to protein post-translational modification information, such as Phospho.ELM, PhosphoSitePlus, O-GLYCBASE, dbSNO, SysPTM, UbiProt, MeMo, PupDB, HPRD,and UniProtKB/Swiss-Prot are integrated into dbPTM, as shown in statistics page. Covalent protein-DNA linkage and Phosphorylation. D-amino acid and Hydroxylation. D-amino acid and Thioether bond. Methylation and Thioether bond.

2

dbPTM

http://dbptm.mbc.nctu.edu.tw/statistics.php

Drug binding-associated PTM sites. The statistics of external PTM resource in dbPTM. Experimental Post-Translational Modifications (PTMs). 65,090 PTM sites within 20,877 proteins. 546,911 PTM sites within 369,106 proteins. 42,914 phosphorylation sites within 8,698 proteins. Phosphorylated protein and phosphorylation sites. 456,436 modification sites within 52,095 proteins. 2,353 PTM sites within 185 glycoproteins. Experimental S-nitrosylated pretein and S-nitrosylated sites. Number of Positive sites.

3

dbPTM

http://dbptm.mbc.nctu.edu.tw/download.php

Drug binding-associated PTM sites. The experimentally verified PTM sites. The predicted accessible surface areas (ASA) of Swiss-Prot proteins. The predicted secondary structures of Swiss-Prot proteins. The Benchmark Data Set for PTM Analyses. The experimentally verified PTM sites. Lysine, serine, and threonine. Serine, threonine, tyrosine, and histidine. Alanine, glycine, lysine, methionine, serine, and threonine. N-palmitoyl cysteine and S-palmitoyl cysteine. The HMM Predicted PTM sites.

4

dbPTM

http://dbptm.mbc.nctu.edu.tw/introduction.php

Drug binding-associated PTM sites. An Informative Resource for Protein Post-Translational Modifications.

5

dbPTM

http://dbptm.mbc.nctu.edu.tw/tutorial.php

Drug binding-associated PTM sites. Tutorial in Search Page. User can easily search three major queries involving Protein keyword (Protein name or Gene Name), or Database ID (SwissProt ID, SwissProt AC, GO ID, or InterPro ID), or Protein Sequence (in FASTA format) in the search page. Firstly, users fill the input data corresponding to your interesting fields and then click on the "Submit" button to query the matching proteins. Tutorial in Browse Page.

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proteomescout.wustl.edu

Home - Experiments

https://proteomescout.wustl.edu/experiments

HPRD: Human Protein Reference Database Curated Modifications. July 2010 download of HPRD's modification table. Keshava Prasad TS,Goel R,Kandasamy K,Keerthikumar S,Kumar S,Mathivanan S,Telikicherla D,Raju R,Shafreen B,Venugopal A,Balakrishnan L,Marimuthu A,Banerjee S,Somanathan DS,Sebastian A,Rani S,Ray S,Harrys Kishore CJ,Kanth S,Ahmed M,Kashyap MK,Mohmood R,Ramachandra YL,Krishna V,Rahiman BA,Mohan S,Ranganathan P,Ramabadran S,Chaerkady R,Pandey A. Gupta R,Birch H,Rapacki K,Brunak S,Hansen JE. DbPTM 3&#...

functionalglycomics.net

Consortium Links

http://www.functionalglycomics.net/static/consortium/links.shtml

Jump to main content. Consortium for Functional Glycomics (. Bacterial Carbohydrate Structure DataBase. GLYDE GLYcan data exchange standard. LINUCS Linear encoding of sugars. CabosML Carbohydrate sequence markup Language. GlycoMod Glycan composition from molpeak. Glycofragment Masses from glycan fragments. GlycosidIQ Glycofragment mass fingerprinting. GlycoWorkbench - MS analysis tool suite. CASPER 1H,13C-NMR estimation. SugarBase 1H,13C-NMR search. NMR-Search 1H,13C-NMR search.

jes1950.jp

リンク

http://www.jes1950.jp/link.html

WORLD-2DPAGE List: Index to 2-D PAGE databases and services. 二次元電気泳動法に基づく各種プロテオームデータベースポータルサイト ExPASy.org. SIB (Swiss Institute of Bioinformatics) が管理運用する Two-dimensional polyacrylamide gel electrophoresis database. 東京都健康長寿医療センター研究所プロテオーム共同研究センター TMIG-PCC が管理運用する、老化機構研究のための二次元電気泳動プロテオームデータベース. 横浜市立大学先端医科学研究センタープロテオーム解析センターのLIMS上で開発中のタンパク質翻訳後修飾データベース ModProt を紹介するサイト. 台湾の国立交通大学 National Chiao Tung University のサーバーで公開されているタンパク質翻訳後修飾データベース. 研究用語辞典電気泳動研究.net. 初めての電気泳動タンハク質の電気泳動アトー株のパンフレット.

dbemt.bioinfo-minzhao.org

Document

http://dbemt.bioinfo-minzhao.org/tutorial.cgi

Epithelial-Mesenchymal Transition gene database (dbEMT) Home. Data collection of dbEMT and how to use dbEMT:. Data collection of dbEMT database. Four steps to collect Epithelial-Mesenchymal Transition genes. Curation Epithelial-Mesenchymal Transition genes from literature. Information for Epithelial-Mesenchymal Transition genes. General information and literature evidence. Query and search database. Text search of Epithelial-Mesenchymal Transition gene. Quick access information in database. Construction ...

functionalglycomics.com

Consortium Links

http://functionalglycomics.com/static/consortium/links.shtml

Jump to main content. Consortium for Functional Glycomics (. Bacterial Carbohydrate Structure DataBase. GLYDE GLYcan data exchange standard. LINUCS Linear encoding of sugars. CabosML Carbohydrate sequence markup Language. GlycoMod Glycan composition from molpeak. Glycofragment Masses from glycan fragments. GlycosidIQ Glycofragment mass fingerprinting. GlycoWorkbench - MS analysis tool suite. CASPER 1H,13C-NMR estimation. SugarBase 1H,13C-NMR search. NMR-Search 1H,13C-NMR search.

rhesusbase.com

Gene Page Manual

http://www.rhesusbase.com/help/document/genePage.jsp

Chr1:1-100000 / chr1:1 9999. This document illustrates the help information about RhesusBase Gene Page. Nine functional categories of annotations were integrated and standardized, including Gene Description, Gene/Transcript Structure, Expression Profile, Regulation Mode, Variation and Repeats, Comparative Genomics, Gene Function, Phenotype/Disease Association and Drug Development. We also integrated all related annotations in human and mouse for each gene in rhesus macaque, aiming to maximize the...A fre...

rhesusbase.org

Gene Page Manual

http://www.rhesusbase.org/help/document/genePage.jsp

Chr1:1-100000 / chr1:1 9999. This document illustrates the help information about RhesusBase Gene Page. Nine functional categories of annotations were integrated and standardized, including Gene Description, Gene/Transcript Structure, Expression Profile, Regulation Mode, Variation and Repeats, Comparative Genomics, Gene Function, Phenotype/Disease Association and Drug Development. We also integrated all related annotations in human and mouse for each gene in rhesus macaque, aiming to maximize the...A fre...

glycan.mit.edu

Consortium Links

http://glycan.mit.edu/static/consortium/links.shtml

Jump to main content. Consortium for Functional Glycomics (. Bacterial Carbohydrate Structure DataBase. GLYDE GLYcan data exchange standard. LINUCS Linear encoding of sugars. CabosML Carbohydrate sequence markup Language. GlycoMod Glycan composition from molpeak. Glycofragment Masses from glycan fragments. GlycosidIQ Glycofragment mass fingerprinting. GlycoWorkbench - MS analysis tool suite. CASPER 1H,13C-NMR estimation. SugarBase 1H,13C-NMR search. NMR-Search 1H,13C-NMR search.

tsp.biocuckoo.org

GPS-TSP 1.0 - Prediction of Tyrosine of Sulfation Sites

http://tsp.biocuckoo.org/links.php

Last update: Oct. 20th, 2014. Computational resources of Protein Sulfation :. Last updated: May 5th, 2014. We apologized that the computational studies without any web links of databases or tools will not be included in this compendium, since it's not easy for experimentalists to use studies directly. We are grateful for users feedback. Please inform Zhicheng Pan. Or Dr Jian Ren. To add, remove or update one or multiple web links below. 1 Protein Sulfation Databases.

functionalglycomics.org

Consortium Links

http://www.functionalglycomics.org/static/consortium/links.shtml

Jump to main content. Consortium for Functional Glycomics (. Bacterial Carbohydrate Structure DataBase. GLYDE GLYcan data exchange standard. LINUCS Linear encoding of sugars. CabosML Carbohydrate sequence markup Language. GlycoMod Glycan composition from molpeak. Glycofragment Masses from glycan fragments. GlycosidIQ Glycofragment mass fingerprinting. GlycoWorkbench - MS analysis tool suite. CASPER 1H,13C-NMR estimation. SugarBase 1H,13C-NMR search. NMR-Search 1H,13C-NMR search.

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dbptm.mbc.nctu.edu.tw

dbPTM

DbPTM 10th Year Anniversary. An Integrated Resource for Protein Post-Translational Modifications. Drug binding-associated PTM sites. The Statistics of PTMs. Move to the Statistics Page. Modified residue Glycosylation Lipidation Crosslink. Structural characterization of PTM substrate sites. The Benchmark dataset of PTMs. ex: O-Glycosylation. Reconstruct the PTM Regulatory Network. ex: O-Glycosylation. Welcome to dbPTM 10th Year Anniversary. Integrative Platform for PTM Analysis. Large-scale identification...

dbptmethods.com

DBPT Methods - EVM for Software Projects

Earned Value Made Easy. DBPT Methods is conducting a workshop at EVM World 2008, May 15th 2008 in Clearwater, FL. Get the conference brochure here . . . Thanks to everyone who attended the DBPT workshop at the CPM conference. Your inputs and thoughts are deeply appreciated. Follow this link. To the presentation bibliography. Download the slides presented at the 2008 EVM conference. Click this link. To view or download the slides. Phase planning and tracking best practices implemented by DBPT. If you have...

dbptraining.com

DBP Training & Consulting - Home

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dbptraining.stanford.edu

Developmental-Behavioral Pediatrics Training Program - Stanford University School of Medicine

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