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Alkan Lab

Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. Computational genomics at Bilkent University. As the Bioinformatics and Computational Genomics Group, we develop combinatorial algorithms to analyze genomic sequence data to discover, genotype, and phase genomic variants with a special focus on structural variation and segmental duplication. We are also interested in de novo. Bilkent University, Faculty of Engineering, 06800, Ankara, Turkey.

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Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. Computational genomics at Bilkent University. As the Bioinformatics and Computational Genomics Group, we develop combinatorial algorithms to analyze genomic sequence data to discover, genotype, and phase genomic variants with a special focus on structural variation and segmental duplication. We are also interested in de novo. Bilkent University, Faculty of Engineering, 06800, Ankara, Turkey.
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Alkan Lab | donut.cs.bilkent.edu.tr Reviews

https://donut.cs.bilkent.edu.tr

Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. Computational genomics at Bilkent University. As the Bioinformatics and Computational Genomics Group, we develop combinatorial algorithms to analyze genomic sequence data to discover, genotype, and phase genomic variants with a special focus on structural variation and segmental duplication. We are also interested in de novo. Bilkent University, Faculty of Engineering, 06800, Ankara, Turkey.

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1

Alkan Lab

http://donut.cs.bilkent.edu.tr/news.html

Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. DNAdigest Blog, September 2015. The genes that turned wildcats into kitty cats. Science Magazine, November 2014. The World's Most Influential Scientific Minds 2014. Thomson Reuters Science Watch, June 2014. Dogs' Closest Wolf Ancestors Went Extinct, DNA Study Shows. Huffington Post, January 2014. International Team Catalogs Ape Genetic Diversity. Genome Technology, July 2013. The Guardian, October 2012.

2

Alkan Lab

http://donut.cs.bilkent.edu.tr/people.html

Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. Can Alkan, Ph.D. Assistant Professor, January 2012 - present. Department of Computer Engineering. Acting Assistant Professor, June 2011 - January 2012. Department of Genome Sciences. Seattle, WA, United States. Postdoctoral Fellow, October 2005 - June 2011. Department of Genome Sciences, U. Washington. Seattle, WA, United States. Visiting Scholar, January 2004 - October 2005. Cleveland, OH, USA. Worce...

3

Alkan Lab

http://donut.cs.bilkent.edu.tr/links.html

Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. S Cenk Şahinalp, Lab for Computational Biology. Simon Fraser University, Burnaby, BC, Canada. Evan E. Eichler, Eichler Lab. University of Washington, Seattle, WA, United States. Fereydoun Hormozdiari, UC Davis Computational Genomics. UC Davis, Davis, CA, United States. Pennsylvania State University, University Park, PA, USA. Carnegie Mellon University, Pittsburgh, PA, United States. Ryan E. Mills.

4

Alkan Lab

http://donut.cs.bilkent.edu.tr/support.html

Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. European Molecular Biology Organization Installation Grant ( IG-2521. Title: Development and application of computational methods to analyze next generation sequence data to characterize both normal and disease causing variation, and build de novo. Goal: Analysis of biological sequences generated with the next-gen sequencing platforms. PI: Can Alkan and Joao Andre Carriço. Goal: Developing specialized...

5

Alkan Lab

http://donut.cs.bilkent.edu.tr/publications.html

Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. Joint first or last authors are marked with * in case of equal contribution). Building and Improving Reference Genome Assemblies. Karyn Meltz Steinberg, Valerie A. Schneider. Can Alkan. Michael J. Montague, Wesley C. Warren, Deanna M. Church, Richard K. Wilson. Proceedings of the IEEE. Mar 3, 105(3): 422-435, 2017. Discovery of large genomic inversions using long range information. 88(4): 648-661, 2016.

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Bioinformatics and Computational Genomics Group. Department of Computer Engineering, Bilkent University. Computational genomics at Bilkent University. As the Bioinformatics and Computational Genomics Group, we develop combinatorial algorithms to analyze genomic sequence data to discover, genotype, and phase genomic variants with a special focus on structural variation and segmental duplication. We are also interested in de novo. Bilkent University, Faculty of Engineering, 06800, Ankara, Turkey.

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