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Eg SET000033, DPpol000025, DPseq001739). AF175215, AF175215.1, 6002968) to search into DPDB')" Search by Id:. Select organisms / genes:. Please, select organisms / genes from the lists above. No entry means all organisms / genes. Example: Drosophila simulans, Drosophila buzzatii, Drosophila yakuba). Filter for diversity values:. Nuc diversity (π). Num Segregating sites (S). S per site (s). 952; per site (from S). Var(θ site), no rec. StDev(θ site), no rec. Var(θ site), free rec. 952; per DNA seq. SYNONYM...

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Eg SET000033, DPpol000025, DPseq001739). AF175215, AF175215.1, 6002968) to search into DPDB') Search by Id:. Select organisms / genes:. Please, select organisms / genes from the lists above. No entry means all organisms / genes. Example: Drosophila simulans, Drosophila buzzatii, Drosophila yakuba). Filter for diversity values:. Nuc diversity (π). Num Segregating sites (S). S per site (s). 952; per site (from S). Var(θ site), no rec. StDev(θ site), no rec. Var(θ site), free rec. 952; per DNA seq. SYNONYM...

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2 analysis

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6 2 comparative search

7 3 graphical search

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dpdb home page,analysis,statistics,links,1 general,2 comparative search,3 graphical search,general search,for polymorphic sets,general search help,dpdb accession,or genbank accession,organisms,genes,nucleotide polymorphism,960; jukes&cantor,var π,on exons

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Eg SET000033, DPpol000025, DPseq001739). AF175215, AF175215.1, 6002968) to search into DPDB')" Search by Id:. Select organisms / genes:. Please, select organisms / genes from the lists above. No entry means all organisms / genes. Example: Drosophila simulans, Drosophila buzzatii, Drosophila yakuba). Filter for diversity values:. Nuc diversity (π). Num Segregating sites (S). S per site (s). 952; per site (from S). Var(θ site), no rec. StDev(θ site), no rec. Var(θ site), free rec. 952; per DNA seq. SYNONYM...

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dpdb.uab.cat

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BLAST

http://dpdb.uab.cat/dpdb/blast.asp

Search matches between your query nucleotide/protein sequences and the. Non-redundant sequences from Drosophila. Stored in the DPDB database. Blastp (protein query vs. protein database). Blastn (nucleotide query vs. nucleotide database). Blastx (nucleotide transl. query vs. protein database). Tblastn (protein query vs. nucleotide transl. database). Tblastx (nucl. transl. query vs. nucl. transl. database). SELECT ONE OR MORE DATABASES. STATISTICS OF THE ASSEMBLIES:. NUMBER OF ON-LINE DESCRIPTIONS (V).

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Links

http://dpdb.uab.cat/dpdb/links.asp

OTHER LINKS OF INTEREST. FlyBase (Drosophila database) (UK). Berkeley Drosophila Genome Project Group. Web Directory: Drosophila Virtual Library. TIGR Drosophila gene index. Dosage Compensation in Drosophila. BBC NEWS: Fruit Fly gene success. Zoom the Fruit Fly. Progress and Prospects in Evolutionary Biology: The Drosophila Model. Jeffrey R. Powell (Oxford Univ., Sep 1997). Genetic Variations of Drosophila Melanogaster. L Lindsley (Carnegie Inst. of Washington, Dec 1968). Costas B. Krimbas (Kovaéc).

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Help

http://dpdb.uab.cat/dpdb/help.asp

1) THE SEARCH INTERFACE. Filter for diversity values. Filter for degree of confidence on the polymorphic set. Filter for degree of confidence on the polymorphic set. Filter for degree of confidence on the polymorphic set. SEARCH BY DPDB OR GENBANK ACCESSION NUMBERS. 2) THE ANALYSIS SECTION. CLUSTALW: Multiple Sequences Alignment. BLAST: Basic Local Alignment Search Tool. JALVIEW: Multiple Sequence Alignment Viewer and Editor. B) NUCLEOTIDE DIVERSITY ANALYSIS:. 3) THE STATISTICS SECTION. 8) DPDB DATA MODEL.

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DPDB Home Page: Drosophila DNA polymorphism

http://dpdb.uab.cat/dpdb/dpdb.asp

Drosophila Polymorphism Database (DPDB). Compare diversity measures among species/taxons using the new Comparative Search Tool (implemented from MamPol). Visit the new version of PDA - Pipeline Diversity Analysis v.2 -. The Mammalia Polymorphism Database (MamPol) is now available. If you are interested in analyzing polymorphism at any species or group of species, please contact us. DPDB was officially presented at the ECCB/JBI 2005 conference. That was held in Madrid (Spain). Casillas and Barbadilla 2006.

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Statistics

http://dpdb.uab.cat/dpdb/statistics.asp

Tue May 18 13:43:17 2010. Contents of the Secondary Database. Total number of Polymorphic sets analyzed: 2319. Number of different Species. Number of different Genes. Number of different Molecular Function. Number of different Biological Process. Number of different Cellular Component. Total number of Analysis units: 4471. Average number of analysis units per polymorphic set: 1.9. QUALITY OF THE ALIGNMENTS:. Number of Analysis units according to the Number of sequences. Low quality): 42 (0.9%). Total num...

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Eg SET000033, DPpol000025, DPseq001739). AF175215, AF175215.1, 6002968) to search into DPDB')" Search by Id:. Select organisms / genes:. Please, select organisms / genes from the lists above. No entry means all organisms / genes. Example: Drosophila simulans, Drosophila buzzatii, Drosophila yakuba). Filter for diversity values:. Nuc diversity (π). Num Segregating sites (S). S per site (s). 952; per site (from S). Var(θ site), no rec. StDev(θ site), no rec. Var(θ site), free rec. 952; per DNA seq. SYNONYM...

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Eg SET000033, DPpol000025, DPseq001739). AF175215, AF175215.1, 6002968) to search into DPDB')" Search by Id:. Select organisms / genes:. Please, select organisms / genes from the lists above. No entry means all organisms / genes. Example: Drosophila simulans, Drosophila buzzatii, Drosophila yakuba). Filter for diversity values:. Nuc diversity (π). Num Segregating sites (S). S per site (s). 952; per site (from S). Var(θ site), no rec. StDev(θ site), no rec. Var(θ site), free rec. 952; per DNA seq. SYNONYM...

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