drake.systemsbiology.net

BioTapestry.org GRN Repository

Quick Start User Guide. Welcome to the BioTapestry Model web server. This server displays Gene Regulatory Network models using the BioTapestry Web Viewer client. More information about the BioTapestry Web Client can be found here. Pancreas Genome Regulatory Network. T-cell Developmental Gene Network, 2011. T-cell Developmental Gene Network, 2009. Environment-specific gene regulatory networks for Mycobacterium tuberculosis. Environment And Gene Regulatory Influence Network). Last updated: January 21, 2016.

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BioTapestry.org GRN Repository | drake.systemsbiology.net Reviews

<META> DESCRIPTION

Quick Start User Guide. Welcome to the BioTapestry Model web server. This server displays Gene Regulatory Network models using the BioTapestry Web Viewer client. More information about the BioTapestry Web Client can be found here. Pancreas Genome Regulatory Network. T-cell Developmental Gene Network, 2011. T-cell Developmental Gene Network, 2009. Environment-specific gene regulatory networks for Mycobacterium tuberculosis. Environment And Gene Regulatory Influence Network). Last updated: January 21, 2016.

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1 web client portal

2 contents

3 models

4 davidson lab models

5 endomesoderm gene network

6 ectoderm gene network

7 rothenberg lab models

8 baliga lab models

9 egrin

10 limb morphogenesis

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BioTapestry.org GRN Repository | drake.systemsbiology.net Reviews

https://drake.systemsbiology.net

Quick Start User Guide. Welcome to the BioTapestry Model web server. This server displays Gene Regulatory Network models using the BioTapestry Web Viewer client. More information about the BioTapestry Web Client can be found here. Pancreas Genome Regulatory Network. T-cell Developmental Gene Network, 2011. T-cell Developmental Gene Network, 2009. Environment-specific gene regulatory networks for Mycobacterium tuberculosis. Environment And Gene Regulatory Influence Network). Last updated: January 21, 2016.

INTERNAL PAGES

drake.systemsbiology.net

1

Drosophila Wing Development

http://drake.systemsbiology.net/DW

Click for larger version). This model is a supplement to the following paper:. Paul, L., Wang, S.-H., Manivannan, S.N., Bonanno, L., Lewis, S., Austin, C.L., Simcox, A. Dpp-induced Egfr signaling triggers postembryonic wing development in Drosophila. Proc Natl. Acad. Sci. USA 110(13): 5058 5063, 2013. NOTE: See Figure S3 in supplemental materials.). Launches the BioTapestry Web Viewer Client. The BioTapestry Web Client 'Quick Start' guide can be found here. Last updated: April 29, 2015.

2

BioTapestry Web Client Quick Start

http://drake.systemsbiology.net/howto.html

BioTapestry Web Client Quick Start. Levels of Network Models. Overlays and Network Modules. Levels of Network Models. BioTapestry organizes a network model in a hierarchical series of models and sub-models, and displays this hierarchy in a tree view on the left side of the browser window. You can choose the model you want to view by clicking on it in the tree view. Back to the top. Back to the top. Back to the top. Key while clicking on each new item. Use the Clear Current Selections. Back to the top.

3

Ventral Neural Tube

http://drake.systemsbiology.net/VNT

Mouse Ventral Neural Tube Specification. Click for larger version). This model is a supplement to the following paper:. Vokes, S.A., Ji, H., McCuine, S., Tenzen, T., Giles, S., Zhong, S., Longabaugh, W.J.R., Davidson, E. H., Wong, W.H., McMahon, A.P. Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning. Development 134, 1977-1989, 2007. This model was originally hosted at the McMahon Lab. Mouse Ventral Neural Tube Specification. Last updated: January 16, 2015.

4

Zebrafish

http://drake.systemsbiology.net/Zf

Zebrafish Embryo Developmental Gene Regulatory Network. Click for larger version). This model is a supplement to the following paper:. Chan TM, Longabaugh W, Bolouri H, Chen HL, Tseng WF, Chao CH, Jang TH, Lin YI, Hung SC, Wang HD, Yuh CH. Developmental gene regulatory networks in the zebrafish embryo. Biochim Biophys Acta 2009 Apr;1789(4):279-98. Doi: 10.1016/j.bbagrm.2008.09.005. Epub 2008 Oct 8. Launches the BioTapestry Web Viewer Client. For the genes in this model. Last updated: January 21, 2015.

5

Limb Morphogenesis

http://drake.systemsbiology.net/LimbMorph

Click for larger version). This model is a supplement to the following paper:. Rabinowitz, A.H. and Vokes, S.A. Integration of the transcriptional networks regulating limb morphogenesis. Developmental Biology 368:365-380, 2012. Launches the BioTapestry Web Viewer Client. The BioTapestry Web Client 'Quick Start' guide can be found here. Last updated: November 24, 2015.

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Quick Start User Guide. Welcome to the BioTapestry Model web server. This server displays Gene Regulatory Network models using the BioTapestry Web Viewer client. More information about the BioTapestry Web Client can be found here. Pancreas Genome Regulatory Network. T-cell Developmental Gene Network, 2011. T-cell Developmental Gene Network, 2009. Environment-specific gene regulatory networks for Mycobacterium tuberculosis. Environment And Gene Regulatory Influence Network). Last updated: January 21, 2016.

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