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Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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bbmri | ebiobank.org Reviews

https://ebiobank.org

Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

INTERNAL PAGES

ebiobank.org

1

MendelianQcPipeline – bbmri

http://www.ebiobank.org/wiki/MendelianQcPipeline

Protocol for Mendelian-error based QC. In this project, we will establish an infrastructure and perform QC of genotypic data generated by BGI using Mendelian errors check. Yurii, Lennart, Elisa. End Sep 2010 - end Dec 2010. PostDoc at 0.5 fte BI/data manager/programmer at 0.25 fte (the same as the one on ChipBasedQcPipeline. Experienced supervisor at 0.1 fte (the same as the one on ChipBasedQcPipeline. Availability of VCF data, ChipBasedQcPipeline. Other projects depending on this. Download in other form...

2

TracIni – bbmri

http://www.ebiobank.org/wiki/TracIni

The Trac Configuration File. The Trac Configuration File. Trac is configured by editing the. File, located in the. Configuration file and its parent directory should be writable by the web server. Trac monitors the timestamp of the file to trigger a complete environment reload and flush its caches when the timestamp changes. Most changes to the configuration will be reflected immediately, though changes to the. File when none was previously present. Inherit] file = /path/to/global/trac.ini. For sharing p...

3

StructuralVariationPipeline – bbmri

http://www.ebiobank.org/wiki/StructuralVariationPipeline

This page summaries the SV pipelines used in GoNL. Because of different coverage, the following software are used to call SVs from GoNL data. Pindel: Eric-Wubbo, Kai. DWAC-seq/1-2-3 SV: Victor, Slavik. Breakdancer: Jayne, Joep. GenomeSTRiP: Bob, Laurent. The following software are used to assemble reads to detect novel (large) insertions. PCR/chip validation is performed by Wigard, Johan. Pilot phase (Sep, Oct 2011). Production phase (Nov, Dec 2011). UMCG BAMs to be used for production calls.

4

Imputations – bbmri

http://www.ebiobank.org/wiki/Imputations

Working group on Imputation. We have started a working group on imputations to develop a best practice based pipeline that will perform well on the compute resources we will be using. For now the documents are only visible to project members. If you want to get access contact David or Morris. Paul de Bakker (PI). Last modified on Jul 5, 2012 10:35:40 PM. Download in other formats:. Powered by Trac 1.0.7. Visit the Trac open source project at. Http:/ trac.edgewall.org/.

5

GonlStart – bbmri

http://www.ebiobank.org/wiki/GonlStart

Dynamic bioinformatics infrastructures for biobank enrichment (BBMRI-NL rainbow 2). This is the wiki for the Dynamic bioinformatics infrastructures for biobank enrichment project of. BBMRI-NL (rainbow project 2). In collaboration with the Genome of the Netherlands project (. BBMRI-NL rainbow project 1), UMCG, UMCU, VU, ErasmusMC, LUMC and NBIC. Minutes of our Skype meetings (members only). Description of the bioinformatics regenboog. Description of the GvNL analysis objectives. Download in other formats:.

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ebiobank.org

bbmri

Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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