smallchangebio.wordpress.com
Small Change Bioinformatics | Page 2
https://smallchangebio.wordpress.com/page/2
July 11, 2014. Notes: Bioinformatics Open Source Conference 2014 day 2: Philip Bourne, Software Interoperability, Open Science. I’m at the 2014 Bioinformatics Open Source Conference (BOSC). In Boston. It’s a great two day conference devoted to open source, science and community. These are my notes from the day 2 morning session. Next Day Video. Recorded all the talks and they’re available on the Open Bio video site. Biomedical Research as an Open Digital Enterprise. Mentions the current issue that softwa...
bcbio.wordpress.com
Summary from Bioinformatics Open Science Codefest 2013: Tools, infrastructure, standards and visualization | Blue Collar Bioinformatics
https://bcbio.wordpress.com/2013/07/18/summary-from-bioinformatics-open-science-codefest-2013-tools-infrastructure-standards-and-visualization
Summary from Bioinformatics Open Science Codefest 2013: Tools, infrastructure, standards and visualization. The 2013 Bioinformatics Open Source Conference (BOSC). Starts tomorrow in Berlin, Germany. It’s a yearly conference devoted to community-based software development projects supporting biological research. Members of the Open Bioinformatics Foundation. Discuss implementations and approaches to better provide interoperable and reusable software, libraries and pipelines. Kindly hosted Codefest 2013.
smallchangebio.wordpress.com
Notes: Bioinformatics Open Source Conference 2015 day 1 afternoon — Standards, Interoperability and Diversity Panel | Small Change Bioinformatics
https://smallchangebio.wordpress.com/2015/07/11/bosc2015day1b
Notes: Bioinformatics Open Source Conference 2015 day 1 morning — Holly Bik and Data Science. Notes: Bioinformatics Open Source Conference 2015 day 2 morning — Ewan Birney, Open Science and Reproducibility →. July 11, 2015. Notes: Bioinformatics Open Source Conference 2015 day 1 afternoon — Standards, Interoperability and Diversity Panel. I’m at the 2015 Bioinformatics Open Source Conference (BOSC). Portable workflow and tool descriptions with the CWL. Michael R. Crusoe. And builds off ISATools. Galaxy a...
robertdavidstevens.wordpress.com
Robert Stevens' Blog | Feed your head | Page 2
https://robertdavidstevens.wordpress.com/page/2
Robert Stevens' Blog. Fundamental barriers to accessibility to digital materials. November 27, 2014. There’s no need to go into the details of my D.Phil. work here, because I want to look at basics of interacting with information when one cannot see; in particular what’s possible (if not beautiful) In terms of interaction and what the real “can’t do very well” problems are that, as far as I can tell, still remain. This comes to two of the things that I worked out during my D.Phil.:. I lack an adequate.
robertdavidstevens.wordpress.com
June | 2014 | Robert Stevens' Blog
https://robertdavidstevens.wordpress.com/2014/06
Robert Stevens' Blog. Archive for June, 2014. Learning about a domain from an ontology. June 20, 2014. One of the things I (and I think we collectively have done to a great extent) is forgotten about or neglected ontology as “tutorial”. We used to talk about this way back in TAMBIS. Is this tutorial aspect of ontology going to give a full understanding? The Software Ontology (SWO). June 19, 2014. Our paper on the Software Ontology (SWO). James Malone, Andy Brown, Allyson Lister, Jon Ison, Duncan Hull, He...
epistolatory.blogspot.com
Thoughts of a technocrat as letter sequences: August 2012
http://epistolatory.blogspot.com/2012_08_01_archive.html
Thoughts of a technocrat as letter sequences. IT, technology, greek politics, system administration, linux, information security. Friday, August 3, 2012. The bioinformatics sysadmin craftmanship: An EMBOSS 6.5 production server install: Part 2: EMBOSS database access setup. Remote data access methods and the emboss.default file. Video). EMBOSS is not the fastest and most efficient way to index your flatfile databases. You should look at something like MRS. And similar systems to have a more efficient way...
genouest.org
Software Manager
http://www.genouest.org/outils/softwaremanager/app.php
How does it work? This tool is based on ontology EDAM ( http:/ edamontology.org/. Which allows the classification of bioinformatics software according to their scope, operation they perform, and the data used or produced. The tool takes into account the operation of the software. You can narrow the list by the various proposed filters. One filter is active at a time. Filter by keyword (english terms). Or resource name :. Filter by operation :.
softwareontology.wordpress.com
SWOP | Software Ontology Project | Page 2
https://softwareontology.wordpress.com/page/2
An overview of SWORD. Newer posts →. May 28, 2013. Over the past few days I have been working to fix the approximately 170 unsatisfiable classes that were present in SWO. The vast majority of these were due to improper linking of. Classes directly to a. Rather than to a. Class One change is detailed below, and the rest of the classes are just named, although the process to fix them was similar. Unsatisfiable classes: Data is disjoint with. 8220;data format specification”. Class: 'Affymetrix-compliant dat...
