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Emma Hodcroft - PhD

Welcome to emmahodcroft.com. I am a post-doctoral researcher at the University of Edinburgh in Scotland, working with Prof Andrew Leigh Brown. I recently completed my PhD, during which I developed a new, quantitative-genetics based approach to estimate the heritability (viral genetic effect) of virulence in HIV. I am now primarily involved in the PANGEA HIV. The most exciting phrase to hear in science, the one that heralds. The most discoveries, is not "Eureka! But "That's funny.". Code, but has been hig...

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CONTACTS AT EMMAHODCROFT.COM

Emma Hodcroft

2206 ●●●●●rd Dr

Arl●●●ton , TX, 76012

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1.81●●●●3662
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Emma Hodcroft

2206 ●●●●●rd Dr

Arl●●●ton , TX, 76012

US

1.81●●●●3662
fr●●●●●●●●●●●@yahoo.com

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Emma Hodcroft

2206 ●●●●●rd Dr

Arl●●●ton , TX, 76012

US

1.81●●●●3662
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Emma Hodcroft - PhD | emmahodcroft.com Reviews
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Welcome to emmahodcroft.com. I am a post-doctoral researcher at the University of Edinburgh in Scotland, working with Prof Andrew Leigh Brown. I recently completed my PhD, during which I developed a new, quantitative-genetics based approach to estimate the heritability (viral genetic effect) of virulence in HIV. I am now primarily involved in the PANGEA HIV. The most exciting phrase to hear in science, the one that heralds. The most discoveries, is not Eureka! But That's funny.. Code, but has been hig...
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Emma Hodcroft - PhD | emmahodcroft.com Reviews

https://emmahodcroft.com

Welcome to emmahodcroft.com. I am a post-doctoral researcher at the University of Edinburgh in Scotland, working with Prof Andrew Leigh Brown. I recently completed my PhD, during which I developed a new, quantitative-genetics based approach to estimate the heritability (viral genetic effect) of virulence in HIV. I am now primarily involved in the PANGEA HIV. The most exciting phrase to hear in science, the one that heralds. The most discoveries, is not "Eureka! But "That's funny.". Code, but has been hig...

INTERNAL PAGES

emmahodcroft.com emmahodcroft.com
1

TreeCollapserCL4: Removing Doubt from Your Trees! Collapse Trees by Bootstrap

http://www.emmahodcroft.com/TreeCollapseCL.html

Roots, measures, and collapses phylogenetic trees to polytomies based on bootstrap value! This command-line Java program takes in Nexus/Newick-style phylogenetic tree code (including files exported from FigTree) that includes bootstrap values and branch lengths, and analyses them using any combination of three main functions:. Measuring the length and other attributes of the tree. Stay informed about updates to TreeCollapse4 - join the mailing list! Updates Since v3.2:. Updates Since v3.1.2:. PLEASE NOTE...

2

Feedback Page

http://www.emmahodcroft.com/feedback.html

Unfortunately this feedback form has been flooded with spam from robots, and so many real messages were filtered as spam and possibly lost! I've tried to solve this, but if you don't get an answer within a couple of weeks (I travel quite a lot), it might be worth emailing me directly. "@ed.ac.uk" is the University of Edinburgh email ending, and most emails use Firstname.Lastname, if you catch my drift. I am a spam robot. Design from HTML5webtemplates.co.uk. Design downloaded from free website templates.

3

PareTree 1.0: Remove Sequences, Bootstraps, and Branch Lengths From Your Trees!

http://www.emmahodcroft.com/PareTree.html

PareTree 1.0.2. This command-line Java program allows users to ‘pare’ down their tree by either removing unwanted leaves (tip-nodes), removing bootstrap information from the tree, or removing branch lengths from the tree or any combination. Both of these functions can be accomplished in languages like R or Perl, but Java allows very large trees to be pared down quickly, efficiently, and easily! See 'Program Details' for more. It is worth mentioning that the total root-to-tip distance is kept the same for...

4

Word Counter

http://www.emmahodcroft.com/worder.html

Note of caution: If your parenthesis don't line up (if you don't close every one you open) this program won't work well. Also, If you have an opening parenthesis inside letters (ex: a(dibke ) it will not exclude what's in that parenthesis. Also, letters right after a closing parenthesis will not be counted (ex: )eed ). Generated by NetBeans IDE by Emma Hodcroft. Code never lies, comments sometimes do. Design from HTML5webtemplates.co.uk. Design downloaded from free website templates.

5

TreeCollapserCL3.2: Removing Doubt from Your Trees! Collapse Trees by Bootstrap

http://www.emmahodcroft.com/TreeCollapseCL3.html

This version of TreeCollapseCL has a bug in the collapsing algorithm and it is not recommended that you use it! Please use the new, updated TreeCollapseCL4. Roots, measures, and collapses phylogenetic trees to polytomies based on bootstrap value! This command-line Java program takes in Nexus/Newick-style phylogenetic tree code (including files exported from FigTree) that includes bootstrap values and branch lengths, and analyses them using any combination of three main functions:. Corrected a minor colla...

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Obbard Lab: Insects, Viruses, Genome evolution

http://obbard.bio.ed.ac.uk/people.html

Insects, Viruses, Genome evolution. PhD and Post-Doc Opportunities. If you're interested in working with us, please get in touch. Although funding opportunities can be difficult to find, I am always interested in writing collaborative grants. If you're looking for a PhD. Then send an email. With your CV and a one-side covering letter that explains your background and interests in science (1/3), your previous research experience (1/3) and an outline of the work you would like to undertake (1/3). Naomi Let...

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Emma Hodcroft - PhD

Welcome to emmahodcroft.com. I am a post-doctoral researcher at the University of Edinburgh in Scotland, working with Prof Andrew Leigh Brown. I recently completed my PhD, during which I developed a new, quantitative-genetics based approach to estimate the heritability (viral genetic effect) of virulence in HIV. I am now primarily involved in the PANGEA HIV. The most exciting phrase to hear in science, the one that heralds. The most discoveries, is not "Eureka! But "That's funny.". Code, but has been hig...

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