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Flanders ExaScience Lab: Software for High Performance Computing

The Exascience Lab researches the application of High Performance Computing (or HPC) to problems in the life sciences and industries. It is a collaboration between members from the pharmaceutical industry, the technology industry, and the research sector. Invited talk on elPrep at the (IB) Seminar on March 20, 2015. New results and software on HPC sparse computation published. Videos from the “High Performance Computing (HPC) for Life Sciences” event now available. Tutorial on GASPI, the PGAS API. The Ex...

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Flanders ExaScience Lab: Software for High Performance Computing | exascience.com Reviews

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The Exascience Lab researches the application of High Performance Computing (or HPC) to problems in the life sciences and industries. It is a collaboration between members from the pharmaceutical industry, the technology industry, and the research sector. Invited talk on elPrep at the (IB) Seminar on March 20, 2015. New results and software on HPC sparse computation published. Videos from the “High Performance Computing (HPC) for Life Sciences” event now available. Tutorial on GASPI, the PGAS API. The Ex...

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Flanders ExaScience Lab: Software for High Performance Computing | exascience.com Reviews

https://exascience.com

The Exascience Lab researches the application of High Performance Computing (or HPC) to problems in the life sciences and industries. It is a collaboration between members from the pharmaceutical industry, the technology industry, and the research sector. Invited talk on elPrep at the (IB) Seminar on March 20, 2015. New results and software on HPC sparse computation published. Videos from the “High Performance Computing (HPC) for Life Sciences” event now available. Tutorial on GASPI, the PGAS API. The Ex...

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exascience.com

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Videos from the “High Performance Computing (HPC) for Life Sciences” event now available

http://www.exascience.com/videos-from-the-high-performance-computing-hpc-for-life-sciences-event-now-available

Jörg Kurt Wegner (Johnson & Johnson) giving closing keynote at EuroQSAR 2014. New results and software on HPC sparse computation published. Videos from the “High Performance Computing (HPC) for Life Sciences” event now available. October 28, 2014. Middot; No Comments. A first video has interviews with several international experts in the area of HPC and life sciences:. The third video is a shorter version of this interview with Eric Dishman:. If you enjoyed this article, please consider sharing it!

2

Software

http://www.exascience.com/life-software

We make part of the software developed in the course of our research available to selected partners or the general public. Please note that any software written by the lab is intended as a proof-of-concept only, and thus carries no guarantees that it will work or that it will not damage your systems. Publically available software from the lab includes:. A C library to aid vectorisation (via ExaScience github/arrow-street. A fork of BWA ALN that improves thread level scalability (via ExaScience github/bwa.

3

Invited talk on elPrep at the (IB)² Seminar on March 20, 2015

http://www.exascience.com/invited-talk-on-elprep-at-the-ib²-seminar-on-march-20-2015

New results and software on HPC sparse computation published. Invited talk on elPrep at the (IB) Seminar on March 20, 2015. February 26, 2015. Middot; No Comments. We are pleased to announce that Charlotte Herzeel from imec is invited to give a talk on the elPrep tool. At the next (IB). Seminar on March 20, 2015. The title of the talk is. ElPrep: high-performance preparation of sequence alignment/map files for variant calling. The location of the event is:. ULB-VUB, La Plaine Campus. 6th floor, CP 263.

4

Jobs

http://www.exascience.com/jobs

Jobs at Exascience Lab. Are you fascinated with high performance computing and/or computational life sciences problems? Have you always dreamed of working with state-of-the-art systems? Now is your chance! Generally speaking we are always looking for interested candidates with experience in numerical kernels for scientific computing with a focus on scalability on large high performance computing clusters. If you are interested send your letter resume using our contact info.

5

Jörg Kurt Wegner (Johnson & Johnson) giving closing keynote at EuroQSAR 2014

http://www.exascience.com/jorg-kurt-wegner-johnson-johnson-giving-closing-keynote-at-euroqsar-2014

Tutorial on GASPI, the PGAS API. Videos from the “High Performance Computing (HPC) for Life Sciences” event now available. Jörg Kurt Wegner (Johnson & Johnson) giving closing keynote at EuroQSAR 2014. September 1, 2014. Middot; No Comments. We are proud to announce that one of the members of our lab will give the closing keynote at this week’s EuroQSAR 2014 event. If you enjoyed this article, please consider sharing it! Invited talk on elPrep at the (IB) Seminar on March 20, 2015.

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twr.cs.kuleuven.be

KU Leuven Scientific Computing Research Group

http://twr.cs.kuleuven.be/news.php

Group Science and Technology. Faculty of Engineering Science. Department of Computer Science. Section Numerical Analysis and Applied Mathematics. Joined our group. As a post-doctoral researcher, he will work for the Flanders Exascience Lab. The aim of the research is to develop numerical techniques for the new generation of super computers. Is elected as the new head of the section Numerical Analysis and Applied Mathematics. His mandate starts August 1. At the Scientific Computing group. From the Technic...

p-cos.net

pascal costanza. main.

http://www.p-cos.net/index.html

July thirty-one, two thousand and sixteen. New papers: elPrep: high-performance preparation of Sequence Alignment/Map files for variant calling. And Halvade: scalable sequence analysis with MapReduce. C) 2005 - 2016 pascal costanza. Original site design by antipop.

p-cos.net

pascal costanza. coordinates.

http://www.p-cos.net/coordinates.html

ExaScience Lab, Intel Belgium. A long curriculum vitae. C) 2005 - 2016 pascal costanza. Original site design by antipop.

p-cos.net

context-scheme.

http://www.p-cos.net/context-scheme.html

ContextScheme is an implementation of some of the essential ideas of Context-oriented Programming. It roughly relates to ContextL. More specifically, ContextScheme is independent of any object-oriented extension, so it illustrates only the essential ideas of dynamic layer activation and deactivation. Both implementations have been tested against R5RS Scheme. For the origin of the test cases.). You can find good introductions to Context-oriented Programming here. Here are the download links: ContextScheme.

albert-jan.yzelman.net

Webpage A. N. Yzelman

http://albert-jan.yzelman.net/bio.php

Albert-Jan Nicholas Yzelman was born in Zevenaar, the Netherlands. He was raised in Duiven. And after obtaining his Atheneum diploma there in 2002, he started his scientific career at Utrecht University. By 2007, he graduated with a B.Sc. in both Mathematics and Computing Sciences, and a M.Sc. in Scientific Computing; his final internship involved researching R-trees. In application to oil reservoir simulation software, done in collaboration with Alten Nederland. To work at KU Leuven.

albert-jan.yzelman.net

Webpage A. N. Yzelman

http://albert-jan.yzelman.net/links.php

Gerard L.G. Sleijpen. Tijmen P. Collignon. Organisations, software, . Society for Industrial and Applied Mathematics. Sparse matrix partitioner and reorderer. Using imported graphics in LaTeX2e. The comprehensive LaTeX symbol list (A4 format). Script which converts XFig's LaTeX/EPS output to standalone and includable graphics or tex files, both eps as well as pdf.

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pckwarms.ch - interesting uncommon events

http://www.pckswarms.ch/beodec14.html

Pckswarms.ch - interesting uncommon events. Most computer programmers tend to make technical decisions based on cliches they read about on the Internet, and unfortunately I don't know the cure for being dumb. - Vladimir Sedach. Bary Ritholtz's The Fine Art of Doing Nothing. Move your startup to a Moroccan Beach. Kill -9 is not enough. Immigrants beat MIT at robots. Part 2 of that story. Small Lisp Relational DB. Big data for the planet. Airline On-Time Stats and causes. State of Deep Learning in 2014.

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Flanders ExaScience Lab: Software for High Performance Computing

The Exascience Lab researches the application of High Performance Computing (or HPC) to problems in the life sciences and industries. It is a collaboration between members from the pharmaceutical industry, the technology industry, and the research sector. Invited talk on elPrep at the (IB) Seminar on March 20, 2015. New results and software on HPC sparse computation published. Videos from the “High Performance Computing (HPC) for Life Sciences” event now available. Tutorial on GASPI, the PGAS API. The Ex...

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