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Extend-NMR: A European Framework 6 Project Linking Nuclear Magnetic Resonance Software

Extend-NMR: A European Framework 6 Project Linking Nuclear Magnetic Resonance Software

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Extend-NMR: A European Framework 6 Project Linking Nuclear Magnetic Resonance Software | extend-nmr.eu Reviews
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Extend-NMR: A European Framework 6 Project Linking Nuclear Magnetic Resonance Software
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1 MDD
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extend nmr,downloads,documentation,topspin,prodecomp,auremol,ccpn,aria,haddock,cing,deposition,overview,the software components,topspin&trade,bayesian peak picking,ccpn and ccpnmr,high ambiguity macromolecular docking,macromolecular structure validation
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Extend-NMR: A European Framework 6 Project Linking Nuclear Magnetic Resonance Software | extend-nmr.eu Reviews

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Extend-NMR: A European Framework 6 Project Linking Nuclear Magnetic Resonance Software

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Extend-NMR: A European Framework 6 Project Linking Nuclear Magnetic Resonance Software

http://www.extend-nmr.eu/haddock.html

Extending NMR for Functional and Structural Genomics. Bijvoet Center for Biomolecular Research, Utrecht University. Alexandre M.J.J. Bonvin, Marc van Dijk, Sjoerd de Vries, Rob Kaptein and Rolf Boelens. Http:/ haddock.chem.uu.nl. Http:/ www.nmr.chem.uu.nl/haddock. HADDOCK: High Ambiguity Driven biomolecular DOCKing. S) to drive the docking process. An AIR is defined as an ambiguous distance between all residues shown to be involved in the interaction. Manage multiple projects with ease. Various export ca...

2

Extend-NMR: A European Framework 6 Project Linking Nuclear Magnetic Resonance Software

http://www.extend-nmr.eu/downloads.html

Extending NMR for Functional and Structural Genomics. Extend-NMR Software Download Locations. The entire Extend-NMR suite can be downloaded together. Software components that cannot be distributed by us due to licensing issues (e.g. TopSpin and CNS) must be installed separately. Programs can also be downloaded and installed one by one. Http:/ www.ccpn.ac.uk/ccpn/projects/extendnmr/obtaining-extend-nmr-release/. Http:/ pc8.nmr.gu.se/ mdd/Downloads. Http:/ aria.pasteur.fr/downloads.

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Extend-NMR: A European Framework 6 Project Linking Nuclear Magnetic Resonance Software

http://www.extend-nmr.eu/prodecomp.html

Extending NMR for Functional and Structural Genomics. Martin Billeter, Doroteya K. Staykova, Jonas Fredriksson. Wwwlundberg.gu.se/nmr/software.php? PRODECOMP: Analysis of 'Fast' NMR Data. Proteins pose a variety of challenges in NMR studies in terms of their size, native disorder, stability etc. 'Fast' NMR is motivated by the resulting, but contradicting, requirements on spectrum dimensionality, resolution and experiment time. C) Decompositions for the DNA-binding protein histone G1 using projections fro...

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Extend-NMR: A European Framework 6 Project Linking Nuclear Magnetic Resonance Software

http://www.extend-nmr.eu/deposition.html

Extending NMR for Functional and Structural Genomics. Chris Penkett, Wim Vranken and Kim Henrick. Http:/ www.ebi.ac.uk/pdbe-xdep/autodep/. Deposition: To PDB and BMRB from a CCPN project. The work within Extend-NMR on the large scale analysis of constraint. Data shows again how important it is for scientists to deposit their data consistently and correctly. The final step in the Extend-NMR pipeline is therefore deposition of the final data in the CCPN project to the wwPDB.

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Extend-NMR: A European Framework 6 Project Linking Nuclear Magnetic Resonance Software

http://www.extend-nmr.eu/auremol.html

Extending NMR for Functional and Structural Genomics. Institute of Biophysics and physical Biochemistry, University of Regensburg. Konrad Brunner¹, Tobias Harsch¹, Harald Donaubauer¹, Wilhelm Malloni¹, Silvia de Sanctis¹, Kumaran Baskaran¹, Bärbel Kieninger¹, Wolfram Gronwald², Klaus-Peter Neidig³ and Hans Robert Kalbitzer¹. Sup1;Institute of Biophysics and Physical Biochemistry, University of Regensburg. Sup2;Institute of functional genomic, University of Regensburg. Http:/ www.auremol.de. Intelligent S...

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bardiaux.fr bardiaux.fr

Benjamin Bardiaux

http://bardiaux.fr/cv/software.html

Ambiguous Restraints for Iterative Assignment (ARIA) Portal: http:/ aria.pasteur.fr. Malliavin TE, Nilges M. ARIA for solution and solid-state NMR.". Protein NMR Techniques, 3rd edition, A. Shekhtman, and D.S. Burz, eds (2012) [Editor site]. Bernard A, Rieping W, Habeck M, Malliavin TE, Nilges M. Influence of different assignment conditions on the determination of symmetric homodimeric structures with ARIA.". Proteins. 2009 May 15;75(3):569-85. [Pubmed]. BMC Struct Biol. 2008 Jun 5;8:30. [Pubmed].

ccpn.ac.uk ccpn.ac.uk

The Collaborative Computing Project for NMR — Collaborative Computational Project for NMR

http://www.ccpn.ac.uk/about

Only in current section. The Collaborative Computing Project for NMR. An Overview of the CCPN Project. CCPN and the community. The Collaborative Computing Project for NMR. CCPN) is a project that aims to bring together computational aspects of the scientific community involved in NMR spectroscopy. Of biological molecules, especially those who work in the field of protein NMR. In the X-ray community. The goals of CCPN. The main objectives of the project are:. To promote the use of the common data model an...

ccpn.ac.uk ccpn.ac.uk

CCPN Collaborations — Collaborative Computational Project for NMR

http://www.ccpn.ac.uk/collaborations

Only in current section. Details of people worldwide who collaborate with CCPN. Aleksandras Gutmanas , Pieter Hendrickx and Gerard J. Kleywegt,. European Bioinformatics Institute, Hinxton, UK. Eldon L. Ulrich and John Markley, University of Wisconsin, Madison, Wisconsin, USA. European Software Development Projects. See full details here. A worldwide e-Infrastructure for NMR and structural biology. European Network of Research Infrastructures for providing Access and Technological Advancements in bio-NMR.

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Extend-NMR: A European Framework 6 Project Linking Nuclear Magnetic Resonance Software

Extending NMR for Functional and Structural Genomics. Extend-NMR is a European Sixth Framework. Project that aims to bring together software for macromolecular NMR into a single well-connected pipeline. Spectrum acquisition and processing. Bruker BioSpin GmbH, Karlsruhe, DE. Processing of non-uniformly sampled spectra. Göteborgs Universitet, Gothenburg, SE. Processing high- dimensionality projection spectra. Göteborgs Universitet, Gothenburg, SE. Universität Regensburg, Regensburg, DE. Bonvin); High-ambi...

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