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Bioinformatics Facility

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Bioinformatics Facility | facility.bioinformatics.ucr.edu Reviews
<META>
DESCRIPTION
purpose
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1 bioinformatics facility
2 search all sites
3 iigb ht sequencing
4 other core facilities
5 bioinfo labs
6 girke lab
7 request tracking
8 announcements
9 members
10 rakesh kaundal
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bioinformatics facility,search all sites,iigb ht sequencing,other core facilities,bioinfo labs,girke lab,request tracking,announcements,members,rakesh kaundal,jordan hayes,neerja katiyar,thomas liu,hardware,software,databases,galaxy,web apps,web blast
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Bioinformatics Facility | facility.bioinformatics.ucr.edu Reviews

https://facility.bioinformatics.ucr.edu

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facility.bioinformatics.ucr.edu facility.bioinformatics.ucr.edu
1

Members - Bioinformatics Facility

http://facility.bioinformatics.ucr.edu/people

Director, Bioinformatics Facility, Ph: 951-888-9835. Linux HPC Systems Administrator, Ph: 951-790-2429. Senior Statistician / Programmer, Ph: 951-266-6644. Systems Administrator, Assistant,. Bioinformatics Analyst (Lab Assistant III), Ph: 951-905-5232. Graduate Student Researcher, Ph: 951-905-5232. 1207 G/E Genomics Building. Riverside, CA 92521.

2

Web Apps - Bioinformatics Facility

http://facility.bioinformatics.ucr.edu/resources/web-tools

Online tool box for small molecule analysis. Identification of conserved protein regions. Ultra-fast compound similarity searching. Motif finding with Sub-HMMs. Web interface to over 100 sequence analysis tools. Internal sequence databases; contact Thomas Girke. To access this service. Web-based tree mining tool. PatScan: Needle: mfold pipeline. MiRNA origin, target and fold-back structure predictions. Includes over 200 tools from EMBOSS, PHYLIP, etc.

3

Rakesh Kaundal - Bioinformatics Facility

http://facility.bioinformatics.ucr.edu/people/rakesh-kaundal

Director, Bioinformatics Facility. Institute for Integrative Genome Biology (IIGB). Department of Botany and Plant Sciences. Http:/ genomics.ucr.edu/members/. Post Doctorate (Bioinformatics),. The Samuel Roberts Noble Foundation. Ardmore (Oklahoma), USA. PhD (Plant Breeding and Genetics), Dr. B.R. Ambedkar University. MSc (Plant Breeding and Genetics), CSK Himachal Pradesh Agricultural University. Post-Graduate Diploma (Bioinformatics),. Next-generation sequencing data analysis;. Datasets by integrating ...

4

My UCR - Bioinformatics Facility

http://facility.bioinformatics.ucr.edu/home/my-ucr

Center for Plant Cell Biology (CEPCEB). Institute for Integrative Genome Biology. Department of Botany and Plant Sciences. Department of Cell Biology and Neurosciences. Biological Sciences Graduate Student Affairs Center (BSGSAC). Computer Science and Engineering Department. List of available graduate programs at UCR. Botany and Plant Sciences. Graduate Program in Genetics, Genomics and Bioinformatics (GGB). Graduate Program in Cell, Molecular and Developmental Biology (CMDB). UCR at Your Service.

5

Hardware - Bioinformatics Facility

http://facility.bioinformatics.ucr.edu/resources/hardware

This site is outdated. The new site will be here. This page provides an overview of the high-performance computing infrastructure available at IIGB's Bioinformatics facility. All servers and compute clusters of our facility are available to researchers from all departments and colleges at UCR for a minimal recharge fee ( see rates. The latest hardware/facility description for grant applications is available here: Facility Description [pdf]. 600 sqft server room located in Genomics Building.

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LINKS TO THIS WEBSITE

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Recent site activity - Bioinformatics Labs

http://labs.bioinformatics.ucr.edu/system/app/pages/recentChanges

Chia-en A. Chang. Oct 31, 2015, 11:17 AM. Thomas Girke edited Events. Oct 17, 2015, 5:24 PM. Thomas Girke edited Home. Mar 30, 2014, 10:29 PM. Thomas Girke edited Events. Feb 16, 2014, 11:46 AM. Thomas Girke edited Home. Feb 16, 2014, 11:43 AM. Thomas Girke edited Home. Feb 16, 2014, 9:20 AM. Thomas Girke edited Home. Feb 16, 2014, 9:18 AM. Thomas Girke edited Home. Feb 16, 2014, 9:16 AM. Thomas Girke edited Home. Feb 16, 2014, 9:14 AM. Thomas Girke edited Home. Feb 16, 2014, 9:13 AM.

stajich.bioinformatics.ucr.edu stajich.bioinformatics.ucr.edu

Publications - Stajich Lab

http://stajich.bioinformatics.ucr.edu/home/publications

See main lab publication page. Berbee ML, Blackwell M, Hibbett DS, James TY, Spatafora JW, Taylor JW. 2009. The fungi. Current Biol 19(18):R840-5. DOI: 10.1016/j.cub.2009.07.004. Dietrich FS, Roy SW. 2007. Comparative genomic analysis of fungal genomes reveals intron rich ancestors. Genome Biology 8:R223. DOI: 10.1186/gb-2007-8-10-r223. Fitzpatrick DA, Logue ME, Stajich JE. Sharpton TJ, Stajich JE. And their relatives. Genome Research 19(10): 1722-1731. DOI: 10.1101/gr.087551.108. Shows that genotype is ...

cepceb.ucr.edu cepceb.ucr.edu

Center for Plant Cell Biology: Facilities

http://cepceb.ucr.edu/facilities

Center for Plant Cell Biology. Institute for Integrative Genome Biology. Center for Plant Cell Biology. A to Z Listing. The Center for Plant Cell Biology addresses significant questions in plant biology on a molecular level to meet such global challenges as improved nutrition, increased crop yield, resistance to pests, sustainable biofuels, and environmental conservation. To accomplish this, the Center engages its world-class researchers, the scientific community, and industry in interdisciplinary re...

stajich.bioinformatics.ucr.edu stajich.bioinformatics.ucr.edu

Links - Stajich Lab

http://stajich.bioinformatics.ucr.edu/home/links

stajich.bioinformatics.ucr.edu stajich.bioinformatics.ucr.edu

Lab Seminars - Stajich Lab

http://stajich.bioinformatics.ucr.edu/home/seminars

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Sitemap - Stajich Lab

http://stajich.bioinformatics.ucr.edu/system/app/pages/sitemap/hierarchy

envisci.ucr.edu envisci.ucr.edu

Environmental Sciences: Facilities

http://envisci.ucr.edu/about/facilities.html

A to Z Listing. The department is equipped to conduct a wide variety of research and teaching activities related to environmental and soil and water sciences. Departmental instruments include the following:. Facility for Isotope Ratio Mass Spectrometry (FIRMS): http:/ ccb.ucr.edu/firms.html. Perkin-Elmer 7300DV inductively coupled plasma optical emission spectrometer. CE Elantech Nitrogen Carbon Analyzer. Mattson Cygnus 100 Fourier-transform infrared spectrometer. Shimadzu total organic carbon analyzer.

stajich.bioinformatics.ucr.edu stajich.bioinformatics.ucr.edu

Recent site activity - Stajich Lab

http://stajich.bioinformatics.ucr.edu/system/app/pages/recentChanges

Nov 18, 2012, 5:49 PM. Jason Stajich edited Members. Oct 13, 2011, 11:23 PM. Jason Stajich edited Jason Stajich. Oct 13, 2011, 11:22 PM. Jason Stajich edited Members. Oct 13, 2011, 11:20 PM. Jason Stajich edited Divya Sain. Oct 13, 2011, 11:20 PM. Jason Stajich edited Divya Sain. Oct 13, 2011, 11:19 PM. Jason Stajich edited Divya Sain. Oct 13, 2011, 11:18 PM. Jason Stajich edited Divya Sain. Oct 13, 2011, 11:17 PM. Jason Stajich edited John Abramyan. Oct 13, 2011, 11:17 PM. Jason Stajich edited Sofia Robb.

plantpathmicro.ucr.edu plantpathmicro.ucr.edu

Plant Pathology and Microbiology: Facilities

http://plantpathmicro.ucr.edu/facilities.html

University of California, Riverside. Plant Pathology and Microbiology. Plant Pathology and Microbiology. A to Z Listing. Core Instrumentation Facility, Institute for Integrative Genome Biology (IIGB). The core facility of IIGB is organized around a 10,000 sq.ft. suite at Noel T. Keen Hall. And other molecular biology services are managed by an Academic Coordinator in the Institute for Integrative Genome Biology. Please contact the Academic Administrator Dr. Glenn Hicks (glenn.hicks@ucr.edu). The Central ...

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Bioinformatics Facility

High-Performance Computing Bioinformatics Facility. Our facility is part of the Institute for Integrative Genome Biology (IIGB). That operates a modern biotechnology hub consisting of core facilities for genomics, bioinformatics, proteomics, chemical genomics and advanced microscopy. Development and maintenance of a high-performance informatics hardware. Infrastructure for our research community at UCR. Instruction of hands-on tutorials and workshops. More detailed information can be found on our software.

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