factorbook.org

Factorbook

The Encyclopedia of DNA Elements ( ENCODE. This website organizes the analysis results of ENCODE TF ChIP-seq data, integrated with other ENCODE data such as ChIP-seq of histone marks and nucleosome occupancy. Astrocyte of the cerebellum. Astrocyte of the spinal cord. Brain microvascular endothelial cell. Choroid plexus epithelial cell. Endothelial cell of umbilical vein. Epithelial cell of esophagus. Epithelial cell of proximal tubule. Fibroblast of mammary gland. Fibroblast of pedal digit skin.

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The Encyclopedia of DNA Elements ( ENCODE. This website organizes the analysis results of ENCODE TF ChIP-seq data, integrated with other ENCODE data such as ChIP-seq of histone marks and nucleosome occupancy. Astrocyte of the cerebellum. Astrocyte of the spinal cord. Brain microvascular endothelial cell. Choroid plexus epithelial cell. Endothelial cell of umbilical vein. Epithelial cell of esophagus. Epithelial cell of proximal tubule. Fibroblast of mammary gland. Fibroblast of pedal digit skin.

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Factorbook | factorbook.org Reviews

https://factorbook.org

The Encyclopedia of DNA Elements ( ENCODE. This website organizes the analysis results of ENCODE TF ChIP-seq data, integrated with other ENCODE data such as ChIP-seq of histone marks and nucleosome occupancy. Astrocyte of the cerebellum. Astrocyte of the spinal cord. Brain microvascular endothelial cell. Choroid plexus epithelial cell. Endothelial cell of umbilical vein. Epithelial cell of esophagus. Epithelial cell of proximal tubule. Fibroblast of mammary gland. Fibroblast of pedal digit skin.

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generegulation.info

TF-DNA binding

http://www.generegulation.info/index.php/dna-protein-binding

Quantitative descriptions of gene regulation. Science 2.0 links. Journals free for authors. Protein-DNA binding: data, tools and models. Also have a look at separate lists of online tools for nucleosome positioning. Please feel free to contact me with suggestions/corrections. Analyzing ChIP seq TF data. Entries are added in the order "newest first", there is no ranking. EPosspum: Analyzes human variants to find known TF binding sites. TEC (Transcription Profiling of. Users can search either TFs that may ...

cis-regevolutionblog.blogspot.com

cis-regulatory evolution: December 2012

http://cis-regevolutionblog.blogspot.com/2012_12_01_archive.html

Justin Crocker's reading list. Friday, December 28, 2012. A Framework for the Establishment of a Cnidarian Gene Regulatory Network for “Endomesoderm” Specification: The Inputs of ß-Catenin/TCF Signaling. A Framework for the Establishment of a Cnidarian Gene Regulatory Network for “Endomesoderm” Specification: The Inputs of ß-Catenin/TCF Signaling. By Eric Röttinger, Paul Dahlin, Mark Q. Martindale. By Melek A. Kayserili, Dave T. Gerrard, Pavel Tomancak, Alex T. Kalinka. Species and in D. melanogaster.

encodeproject.org

ENCODE Encyclopedia, Version 3: Genomic annotations – ENCODE

https://www.encodeproject.org/data/annotations

ENCODE Encyclopedia, Version 3: Genomic annotations. The ENCODE Consortium not only produces data, but also analyzes the data in an integrative fashion. The ENCODE Encyclopedia organizes the most salient analysis products into annotations, and provides tools to search and visualize them. The Encyclopedia has three levels of annotations:. Ground level annotations are typically derived directly from the experimental data. Transcription factor binding (TF ChIP-seq). CTCF Motif from Factorbook. RNA binding p...

cis-regevolutionblog.blogspot.com

cis-regulatory evolution: September 2012

http://cis-regevolutionblog.blogspot.com/2012_09_01_archive.html

Justin Crocker's reading list. Friday, September 28, 2012. Report] Mutations in the neverland Gene Turned Drosophila pachea into an Obligate Specialist Species. Report] Mutations in the neverland Gene Turned Drosophila pachea into an Obligate Specialist Species. A few changes made the fly Drosophila pachea. Reliant on the steroid precursors produced by the senita cactus. Robust 4C-seq data analysis to screen for regulatory DNA interactions. Nature Methods 9, 969 (2012). Regulatory DNA elements can contro...

nature.com

An integrated encyclopedia of DNA elements in the human genome : Nature : Nature Research

http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html

Jump to main content. International weekly journal of science. 11 years ago: The draft human genome. The accessible chromatin landscape of the human genome. An integrated encyclopedia of DNA elements in the human genome. The ENCODE Project Consortium. Download as PDF (2,303 KB). View interactive PDF in ReadCube. ENCODE data production and initial analyses. ENCODE data integration with known genomic features. Insights into human genomic variation. Rare variants, individual genomes and somatic variants.

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The Encyclopedia of DNA Elements ( ENCODE. This website organizes the analysis results of ENCODE TF ChIP-seq data, integrated with other ENCODE data such as ChIP-seq of histone marks and nucleosome occupancy. Astrocyte of the cerebellum. Astrocyte of the spinal cord. Brain microvascular endothelial cell. Choroid plexus epithelial cell. Endothelial cell of umbilical vein. Epithelial cell of esophagus. Epithelial cell of proximal tubule. Fibroblast of mammary gland. Fibroblast of pedal digit skin.

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