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FAiS (Functional Analysis in silico)

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FAiS (Functional Analysis in silico) | fais.hgc.jp Reviews

https://fais.hgc.jp

機能解析イン・シリコ分野 中井研究室

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1

FAiS (Functional Analysis in silico)

http://fais.hgc.jp/index.html

PSORT (Prediction of protein localization sites in cells). Melina2 (A web-based promoter analysis tool). DBTBS (Database of Bacillus subtilis promoters and transcription factors). DBTSS (Database of human transcriptional start sites). DBTGR (Database of tunicate gene regulation). HINTdb (Homologous Interactions Database). HitPredict (Database of protein-protein interactions). TimeXNet (A tool predicting activated pathways using time-course data). DBTMEE (Database of transcriptome in mouse eary embryos).

2

FAiS (Functional Analysis in silico)

http://fais.hgc.jp/index_en.html

PSORT (Prediction of protein localization sites in cells). Melina2 (A web-based promoter analysis tool). DBTBS (Database of Bacillus subtilis promoters and transcription factors). DBTSS (Database of human transcriptional start sites). DBTGR (Database of tunicate gene regulation). HINTdb (Homologous Interactions Database). HitPredict (Database of protein-protein interactions). TimeXNet (A tool predicting activated pathways using time-course data). DBTMEE (Database of transcriptome in mouse eary embryos).

3

FAiS (Functional Analysis in silico)

http://fais.hgc.jp/member/alumni_ja.html

PSORT (Prediction of protein localization sites in cells). Melina2 (A web-based promoter analysis tool). DBTBS (Database of Bacillus subtilis promoters and transcription factors). DBTSS (Database of human transcriptional start sites). DBTGR (Database of tunicate gene regulation). HINTdb (Homologous Interactions Database). HitPredict (Database of protein-protein interactions). TimeXNet (A tool predicting activated pathways using time-course data). DBTMEE (Database of transcriptome in mouse eary embryos).

4

FAiS (Functional Analysis in silico)

http://fais.hgc.jp/member/member_ja.html

PSORT (Prediction of protein localization sites in cells). Melina2 (A web-based promoter analysis tool). DBTBS (Database of Bacillus subtilis promoters and transcription factors). DBTSS (Database of human transcriptional start sites). DBTGR (Database of tunicate gene regulation). HINTdb (Homologous Interactions Database). HitPredict (Database of protein-protein interactions). TimeXNet (A tool predicting activated pathways using time-course data). DBTMEE (Database of transcriptome in mouse eary embryos).

5

FAiS (Functional Analysis in silico)

http://fais.hgc.jp/index.html.en

PSORT (Prediction of protein localization sites in cells). Melina2 (A web-based promoter analysis tool). DBTBS (Database of Bacillus subtilis promoters and transcription factors). DBTSS (Database of human transcriptional start sites). DBTGR (Database of tunicate gene regulation). HINTdb (Homologous Interactions Database). HitPredict (Database of protein-protein interactions). TimeXNet (A tool predicting activated pathways using time-course data). DBTMEE (Database of transcriptome in mouse eary embryos).

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dbtmee.hgc.jp dbtmee.hgc.jp

DBTMEE

http://dbtmee.hgc.jp/tools/llm/index.php

Database of Transcriptome in Mouse Early Embryos. Genes, Synonyms, and RefSeq, DBTMEE IDs. Are scanned from 'TMEE GENE' table,. Are scanned from other tables. You can use multiple keywords delimited by a space. A B (exact matches for 'A' OR 'B'). A* *B* *C (wildcard '*' matches all possible strings). NM 001043228 (exact match for RefSeq ID). NM 0010432* (wildcard '*' matches all possible strings). Inferring probabilistic conditional independency from combinatorial regulation of transcription factors.

dbtmee.hgc.jp dbtmee.hgc.jp

DBTMEE

http://dbtmee.hgc.jp/statis/statistics.php

Database of Transcriptome in Mouse Early Embryos. Genes, Synonyms, and RefSeq, DBTMEE IDs. Are scanned from 'TMEE GENE' table,. Are scanned from other tables. You can use multiple keywords delimited by a space. A B (exact matches for 'A' OR 'B'). A* *B* *C (wildcard '*' matches all possible strings). NM 001043228 (exact match for RefSeq ID). NM 0010432* (wildcard '*' matches all possible strings). Reference: mm9, UCSC Genome Browser, Oct. 2012, Build 37.1. Number of tables: 47. Data size: 235.08 MB.

dbtmee.hgc.jp dbtmee.hgc.jp

DBTMEE

http://dbtmee.hgc.jp/tools/index.php

Database of Transcriptome in Mouse Early Embryos. Genes, Synonyms, and RefSeq, DBTMEE IDs. Are scanned from 'TMEE GENE' table,. Are scanned from other tables. You can use multiple keywords delimited by a space. A B (exact matches for 'A' OR 'B'). A* *B* *C (wildcard '*' matches all possible strings). NM 001043228 (exact match for RefSeq ID). NM 0010432* (wildcard '*' matches all possible strings). Genes, Synonyms, and RefSeq, DBTMEE IDs. Are scanned from 'TMEE GENE' table,. Are scanned from other tables.

cbms.k.u-tokyo.ac.jp cbms.k.u-tokyo.ac.jp

研究室紹介|東京大学大学院 新領域創成科学研究科 メディカル情報生命専攻

http://www.cbms.k.u-tokyo.ac.jp/lab/index.html

ims.u-tokyo.ac.jp ims.u-tokyo.ac.jp

ヒトゲノム解析センター | 東京大学医科学研究所

http://www.ims.u-tokyo.ac.jp/imsut/jp/lab/hgclink

分野長 宮野 悟 総合研究棟8階. マイクロアレイ解析を用いて乳癌 腎癌 膀胱癌 軟部組織腫瘍などの発癌メカニズムの解明とワクチン療法 抗体療法のための標的遺伝子のスクリーニングや機能未知遺伝子の機能解析を行っている。 分野長 宮野 悟 ヒトゲノム解析センター. 分野長 中井 謙太 総合研究棟8階. 分野長 武藤 香織 ヒトゲノム解析センター. 108-8639 東京都港区白金台 4-6-1 TEL:03-3443-8111(代表) E-mail:.

dbtmee.hgc.jp dbtmee.hgc.jp

DBTMEE

http://dbtmee.hgc.jp/download/download.php

Database of Transcriptome in Mouse Early Embryos. Genes, Synonyms, and RefSeq, DBTMEE IDs. Are scanned from 'TMEE GENE' table,. Are scanned from other tables. You can use multiple keywords delimited by a space. A B (exact matches for 'A' OR 'B'). A* *B* *C (wildcard '*' matches all possible strings). NM 001043228 (exact match for RefSeq ID). NM 0010432* (wildcard '*' matches all possible strings). Used in V2.0). Used in V2.0). Used in V2.0). Used in V1.0). Used in V1.0). Raw sequenced data: DRA001066.

dbtmee.hgc.jp dbtmee.hgc.jp

DBTMEE

http://dbtmee.hgc.jp/index.php

Database of Transcriptome in Mouse Early Embryos. Genes, Synonyms, and RefSeq, DBTMEE IDs. Are scanned from 'TMEE GENE' table,. Are scanned from other tables. You can use multiple keywords delimited by a space. A B (exact matches for 'A' OR 'B'). A* *B* *C (wildcard '*' matches all possible strings). NM 001043228 (exact match for RefSeq ID). NM 0010432* (wildcard '*' matches all possible strings). 5 Genes transiently activated at one-cell stage &Oo FPKMTHRES=3&1C FPKMEQUA= &1C FPKMTHRES=3&2C FPKMEQUA= &2...

dbtmee.hgc.jp dbtmee.hgc.jp

DBTMEE

http://dbtmee.hgc.jp/help/help.php

Database of Transcriptome in Mouse Early Embryos. Genes, Synonyms, and RefSeq, DBTMEE IDs. Are scanned from 'TMEE GENE' table,. Are scanned from other tables. You can use multiple keywords delimited by a space. A B (exact matches for 'A' OR 'B'). A* *B* *C (wildcard '*' matches all possible strings). NM 001043228 (exact match for RefSeq ID). NM 0010432* (wildcard '*' matches all possible strings). What are the differences between Version 1.0 and Version 2.0? Why are there so many tables? Since integrativ...

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PSORT (Prediction of protein localization sites in cells). Melina2 (A web-based promoter analysis tool). DBTBS (Database of Bacillus subtilis promoters and transcription factors). DBTSS (Database of human transcriptional start sites). DBTGR (Database of tunicate gene regulation). HINTdb (Homologous Interactions Database). HitPredict (Database of protein-protein interactions). TimeXNet (A tool predicting activated pathways using time-course data). DBTMEE (Database of transcriptome in mouse eary embryos).

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