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FlyBase: a database for drosophila genetics and molecular biology

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CONTACTS AT FLYBASE.ORG

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Harvard University

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View this contact

Harvard University

William Gelbart

Biolab●●●●●●vard U

Cam●●●dge , MA, 02138

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ge●●●●●@morgan.harvard.edu

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FlyBase Homepage | flybase.org Reviews
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FlyBase: a database for drosophila genetics and molecular biology
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genes and genomes,menu,tools,tools overview,query tools and,portals,quicksearch,querybuilder,vocabularies,cytosearch,rna seq profile,interactions browser,imagebrowse,genomic/map tools,blast,gbrowse,jbrowse,feature mapper,rna seq by region,chromosome maps
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FlyBase Homepage | flybase.org Reviews

https://flybase.org

FlyBase: a database for drosophila genetics and molecular biology

SUBDOMAINS

jbrowse.flybase.org jbrowse.flybase.org

FlyBase Homepage

FB2016 05, released October 18, 2016. A Database of Drosophila. Add A New Person. New In This Release. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. Javascript is disabled on your browser. Enhanced Orthology data in FlyBase. Mar 30, 2016. Resources provided by Indiana University.

fb2008_09.flybase.org fb2008_09.flybase.org

FlyBase Homepage

FB2016 05, released October 18, 2016. A Database of Drosophila. Add A New Person. New In This Release. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. Javascript is disabled on your browser. Improved External Resources page. Jan 14, 2016. The External Resources page. Mar 30, 2016.

fb2007_01.flybase.org fb2007_01.flybase.org

FlyBase Homepage

FB2016 05, released October 18, 2016. A Database of Drosophila. Add A New Person. New In This Release. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. Javascript is disabled on your browser. Improved External Resources page. Jan 14, 2016. The External Resources page. Mar 30, 2016.

fb2008_07.flybase.org fb2008_07.flybase.org

FlyBase Homepage

FB2016 05, released October 18, 2016. A Database of Drosophila. Add A New Person. New In This Release. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. Javascript is disabled on your browser. Improved External Resources page. Jan 14, 2016. The External Resources page. Mar 30, 2016.

fb2012_06.flybase.org fb2012_06.flybase.org

FlyBase Homepage

FB2016 05, released October 18, 2016. A Database of Drosophila. Add A New Person. New In This Release. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. Javascript is disabled on your browser. Improved External Resources page. Jan 14, 2016. The External Resources page. Mar 30, 2016.

fb2010_07.flybase.org fb2010_07.flybase.org

FlyBase Homepage

FB2016 05, released October 18, 2016. A Database of Drosophila. Add A New Person. New In This Release. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. Javascript is disabled on your browser. Improved External Resources page. Jan 14, 2016. The External Resources page. Mar 30, 2016.

fb2014_04.flybase.org fb2014_04.flybase.org

FlyBase Homepage

FB2016 05, released October 18, 2016. A Database of Drosophila. Add A New Person. New In This Release. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. Javascript is disabled on your browser. Improved External Resources page. Jan 14, 2016. The External Resources page. Mar 30, 2016.

fb2014_03.flybase.org fb2014_03.flybase.org

FlyBase Homepage

FB2016 05, released October 18, 2016. A Database of Drosophila. Add A New Person. New In This Release. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. Javascript is disabled on your browser. Improved External Resources page. Jan 14, 2016. The External Resources page. Mar 30, 2016.

INTERNAL PAGES

flybase.org flybase.org
1

FlyBase: Archived data

http://flybase.org/static_pages/downloads/archivedata3.html

FB2016 04, released July 28, 2016. A Database of Drosophila. Add A New Person. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. Archived data files for recent releases. For items listed on FlyBase prior to October 2003 please. Previous Releases of FlyBase. To match a GenBank release.

2

FlyBase: Update or remove your contact information

http://flybase.org/static_pages/people/fbpeopleup.html

FB2016 04, released July 28, 2016. A Database of Drosophila. Add A New Person. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. Update or remove your contact information. Please enter your name. Version FB2016 04, released July 28, 2016.

3

' D. melanogaster: 15.16 kbp from 2R:13,437,314..13,452,475

http://flybase.org/cgi-bin/gbrowse2/dmel

FB2016 04, released July 28, 2016. Add A New Person. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. Help with this browser. Show my user ID. D melanogaster: 15.16 kbp from 2R:13,437,314.13,452,475. Go to Dmel R5.57 Archive Server. 2L:80,000.100,000. 2R:80,000.100,000. Transcription S...

4

FlyBase Reference Report: Gelbart and Emmert, 2010.10.13, FlyBase High Throughput Expression Pattern Data Beta Version.

http://flybase.org/reports/FBrf0212041.html

FB2016 04, released July 28, 2016. A Database of Drosophila. Add A New Person. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. Gelbart, W.M., Emmert, D.B. (2010.10.13). FlyBase High Throughput Expression Pattern Data Beta Version. What does this section display? Computing Expression L...

5

FlyBase:

http://flybase.org/static_pages/feature/previous/articles/2014_07/FB2014_04.html

FB2016 04, released July 28, 2016. A Database of Drosophila. Add A New Person. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. With the FB2014 04 web site update of FlyBase. We have incorporated the BDGP's new D. melanogaster. Converting genome sequence locations between assemblies.

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bioinformatika.itd.unair.ac.id bioinformatika.itd.unair.ac.id

Bioinformatic Database Links

http://bioinformatika.itd.unair.ac.id/index.php/bioinformatic-database-links.html

You are here: Home. 21 -August -2016 - 09:29. Written by Kris Cahyo Mulyatno. Saturday, 24 September 2011 09:59. The EMBL Nucleotide Sequence Database (also known as EMBL-Bank) constitutes Europe's primary nucleotide sequence resource. Main sources for DNA and RNA sequences are direct submissions. From individual researchers, genome sequencing projects and patent applications. GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. The Restriction En...

b110-wiki.dkfz.de b110-wiki.dkfz.de

Overview - E-RNAi - Signaling and Functional Genomics Confluence

http://b110-wiki.dkfz.de/confluence/display/ernai

Signaling and Functional Genomics Confluence. Link to this Page. Skip to end of metadata. Created by Thomas Horn. Last modified by B110 Admin. On Feb 04, 2011. Go to start of metadata. E-RNAi is a web tool for the automated design and evaluation of RNAi reagents for a broad spectrum of organisms including Drosophila, C. elegans, Planaria and others. It can be used to design and evaluate long dsRNAs (including esiRNAs) and siRNAs. E-RNAi can be accessed at http:/ www.e-rnai.org/. D melanogaster ( FlyBase.

rnacentral.org rnacentral.org

miRBase Expert Database

http://www.rnacentral.org/expert-database/mirbase

Your query is too short. Your query is too long. Is a database of published miRNA sequences and annotations that provides a centralised system for assigning names to miRNA genes. Distinct sequences from 27. Organisms contributed to RNAcentral. The shortest sequence has 16. Nucleotides, the longest 1,451. The average length is 41. 21 (a subset of species). Browse all miRBase sequences. MiRBase: integrating microRNA annotation and deep-sequencing data. Click the graph to search by sequence length. Result&#...

maricquegen677s09.weebly.com maricquegen677s09.weebly.com

Phenotypes - Autism (NRCAM)

http://maricquegen677s09.weebly.com/phenotypes.html

This web page was produced as an assignment for Gen677. At UW-Madison Spring 2009. The information below is from the GO Consortium. From AmiGO. 2009. NrCAm gene ontology. Retrieved from http:/ amigo.geneontology.org/cgi-bin/amigo/. I attempted to use the Gene Ontology Annotation (GOA). Database to find information about NrCAM's gene ontology, however my searches did not return any results as NrCAM had not been annotated according to the database. Table 2. WormBase included phenotypes that were not ob...

trittgen677s09.weebly.com trittgen677s09.weebly.com

Phenotypes & GO - FOXP2: The Root of Human Language

http://trittgen677s09.weebly.com/phenotypes--go.html

FOXP2: The Root of Human Language. News vs. Science. Gene Sequence. etc. Phenotype and Gene Ontology. This web page was produced as an assignment for Genetics 677, an undergraduate course at UW-Madison. Under the GO Consortium. And the database AmiGO. FOXP2 has five main associations within the gorilla, the orangutan, the chimpanzee, and the human. FOXP2 is known to be involved in two biological processes: caudate nucleus development ( GO:0021757. And putamen development ( GO:0021758. Restults in embryo ...

rnacentral.org rnacentral.org

tmRNA Website Expert Database

http://www.rnacentral.org/expert-database/tmrna-website

Your query is too short. Your query is too long. TmRNA Website Expert Database. Contains predicted tmRNA sequences from RefSeq prokaryotic genomes, plasmids and phages. Distinct sequences from 7,563. Organisms contributed to RNAcentral. The shortest sequence has 23. Nucleotides, the longest 644. The average length is 334. Browse all tmRNA Website sequences. The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts. Click the graph to search by sequence length. Result.entries...

rnacentral.org rnacentral.org

Rfam Expert Database

http://www.rnacentral.org/expert-database/rfam

Your query is too short. Your query is too long. Is a collection of non-coding RNA families represented by manually curated sequence alignments, consensus secondary structures, and predicted homologues. Distinct sequences from 430,777. Organisms contributed to RNAcentral. The shortest sequence has 24. Nucleotides, the longest 10,387. The average length is 430. Browse all Rfam sequences. Rfam 12.0: updates to the RNA families database. Rfam 11.0: 10 years of RNA families. Try reloading the page. Powered b...

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