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3DNA Forum - Index

3DNA Forum - Index

http://forum.x3dna.org/

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3DNA Forum - Index | forum.x3dna.org Reviews
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3DNA Forum - Index
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1 3DNA
2 nucleic acid structure
3 DNA
4 RNA
5 modeling
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3DNA Forum - Index | forum.x3dna.org Reviews

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3DNA Forum - Index

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forum.x3dna.org forum.x3dna.org
1

base overlap

http://forum.x3dna.org/md-simulations/base-overlap/msg1924

Q&As related to 3DNA. An online community for DNA/RNA structural bioinformatics 3DNA. DSSR v1.6.1-2016aug22: an integrated software tool for Dissecting the Spatial Structure of RNA, with web/Jmol/PyMOL interfaces and a user manual! Topic: base overlap (Read 588 times). July 25, 2015, 03:55:43 am. Is there any way i could extract the stacked base overlap area as a function of time? Could i extract overlap area in analysis o/p. 171; Reply #1 on:. July 25, 2015, 09:34:41 am. Will the Ruby script.

2

3DNA Forum - Index

http://forum.x3dna.org/index.php

Q&As related to 3DNA. An online community for DNA/RNA structural bioinformatics 3DNA. DSSR v1.6.1-2016aug22: an integrated software tool for Dissecting the Spatial Structure of RNA, with web/Jmol/PyMOL interfaces and a user manual! Messages from the site administrator on 3DNA. In Summary of registrations. On April 26, 2016, 03:25:27 pm. Request for new features. In Re: four stranded i-moti. On August 15, 2016, 02:02:32 pm. In MOVED: NUPARM vs 3DNA. On October 09, 2015, 12:45:24 pm. In How do I cite DSSR?

3

Major and Minor Groove Widths.

http://forum.x3dna.org/general-discussions/major-and-minor-groove-widths/msg1942

Q&As related to 3DNA. An online community for DNA/RNA structural bioinformatics 3DNA. DSSR v1.6.1-2016aug22: an integrated software tool for Dissecting the Spatial Structure of RNA, with web/Jmol/PyMOL interfaces and a user manual! Major and Minor Groove Widths. Topic: Major and Minor Groove Widths. (Read 1543 times). Major and Minor Groove Widths. July 31, 2015, 01:50:55 am. I am an undergraduate student currently doing my final year project on structural analysis of nucleic acids sequence. First, from ...

4

Site announcements

http://forum.x3dna.org/site-announcements

Q&As related to 3DNA. An online community for DNA/RNA structural bioinformatics 3DNA. DSSR v1.6.1-2016aug22: an integrated software tool for Dissecting the Spatial Structure of RNA, with web/Jmol/PyMOL interfaces and a user manual! February 25, 2012, 12:48:38 am. April 26, 2016, 03:25:27 pm. CCN short communication on base-pair geometry. February 06, 2016, 10:57:25 am. Alternative 3DNA homepage at URL home.x3dna.org. October 11, 2015, 01:37:43 pm. The Forum was down due to a power failure. Add attachment...

5

w3DNA -- web interface to 3DNA

http://forum.x3dna.org/web-3dna

Q&As related to 3DNA. An online community for DNA/RNA structural bioinformatics 3DNA. DSSR v1.6.1-2016aug22: an integrated software tool for Dissecting the Spatial Structure of RNA, with web/Jmol/PyMOL interfaces and a user manual! W3DNA - web interface to 3DNA. Web-3DNA not running on some pdb entries. July 11, 2016, 11:35:21 am. W3DNA hanging on some structures. May 17, 2016, 03:39:58 am. MOVED: 3DNA can recognise DNA with S atoms? September 24, 2015, 11:31:04 pm. September 10, 2015, 03:36:27 pm. Creat...

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sbgrid.org sbgrid.org

SBGrid Consortium - Supported Applications

https://www.sbgrid.org/software

SBGrid In Your Lab. Structure Visualization and Analysis. Structure Visualization and Analysis. No programs selected How to use AppCiter? How to use AppCiter? AppCiter will help you create a bibliography of the programs you wish to cite. 1 Choose Your Programs. Button in the Name column to choose your programs. Proceed to Step 2 to view available citations. Select citations from a custom list. Proceed to Step 3 to download. Export citations or send them to your email. Continue to Step 2. The structure-so...

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/highlights/pauling-triplex-model-of-nucleic-acids-is-available-in-3dna

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Highlights of recent developments of 3DNA/DSSR. Rsaquo; Paulings triplex model of nucleic acids is available in 3DNA. 3DNA C source code is available. The DSSR - block-color option. Integrating DSSR into Jmol and PyMOL. Characterization of base-pair geometry. DSSR base blocks in PyMOL, interactively. Details on the simple base-pair parameters. Fitting of base reference frame. In a r...

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/highlights/the-dssr-block-color-option

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Highlights of recent developments of 3DNA/DSSR. Paulings triplex model of nucleic acids is available in 3DNA. 3DNA C source code is available. Rsaquo; The DSSR - block-color option. Integrating DSSR into Jmol and PyMOL. Characterization of base-pair geometry. DSSR base blocks in PyMOL, interactively. Details on the simple base-pair parameters. Fitting of base reference frame. Script...

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/articles/cartoon-block-representation-of-quadruplex-duplex-interface

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. PyMOL wrapper to 3DNA fiber models. Rsaquo; Cartoon-block representation of quadruplex-duplex interface. 3DNA Forum is spam free. Ask reproducible questions, publicly. Simple parameters for non-Watson-Crick base pairs. Quality control of DSSR (3DNA) source code. Metallo-base pairs can be identified by DSSR. Middot; Weird PDB entries. Middot; 3DNA fiber models. I quickly ran DSSR.

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/articles/3dna-fiber-models

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Rsaquo; 3DNA fiber models. PyMOL wrapper to 3DNA fiber models. Cartoon-block representation of quadruplex-duplex interface. 3DNA Forum is spam free. Ask reproducible questions, publicly. Simple parameters for non-Watson-Crick base pairs. Quality control of DSSR (3DNA) source code. Metallo-base pairs can be identified by DSSR. Middot; Weird PDB entries. Middot; 3DNA fiber models.

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/highlights/highlights-of-recent-developments-of-3dna-dssr

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Rsaquo; Highlights of recent developments of 3DNA/DSSR. Paulings triplex model of nucleic acids is available in 3DNA. 3DNA C source code is available. The DSSR - block-color option. Integrating DSSR into Jmol and PyMOL. Characterization of base-pair geometry. DSSR base blocks in PyMOL, interactively. Details on the simple base-pair parameters. Fitting of base reference frame. Subdir...

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/highlights/dssr-base-blocks-in-pymol-interactively

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Highlights of recent developments of 3DNA/DSSR. Paulings triplex model of nucleic acids is available in 3DNA. 3DNA C source code is available. The DSSR - block-color option. Integrating DSSR into Jmol and PyMOL. Characterization of base-pair geometry. Rsaquo; DSSR base blocks in PyMOL, interactively. Details on the simple base-pair parameters. Fitting of base reference frame. 8217;s...

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/articles/outside-links

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. PyMOL wrapper to 3DNA fiber models. Cartoon-block representation of quadruplex-duplex interface. 3DNA Forum is spam free. Ask reproducible questions, publicly. Simple parameters for non-Watson-Crick base pairs. Quality control of DSSR (3DNA) source code. Metallo-base pairs can be identified by DSSR. Middot; Weird PDB entries. Middot; Highlights of recent developments of 3DNA/DSSR.

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/highlights/schematic-diagrams-of-base-pair-parameters

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Highlights of recent developments of 3DNA/DSSR. Paulings triplex model of nucleic acids is available in 3DNA. 3DNA C source code is available. The DSSR - block-color option. Integrating DSSR into Jmol and PyMOL. Characterization of base-pair geometry. DSSR base blocks in PyMOL, interactively. Details on the simple base-pair parameters. Fitting of base reference frame. Pictorial defi...

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/highlights/3dna-c-source-code-is-available

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Highlights of recent developments of 3DNA/DSSR. Paulings triplex model of nucleic acids is available in 3DNA. Rsaquo; 3DNA C source code is available. The DSSR - block-color option. Integrating DSSR into Jmol and PyMOL. Characterization of base-pair geometry. DSSR base blocks in PyMOL, interactively. Details on the simple base-pair parameters. Fitting of base reference frame. Compil...

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X-VOC • Index page

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forum.x32.in.ua forum.x32.in.ua

Форум журнала x32 - Главная страница

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x360Edit - By Gamers For Gamers

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3DNA Forum - Index

Q&As related to 3DNA. An online community for DNA/RNA structural bioinformatics 3DNA. Did you miss your activation email. DSSR-Jmol featured in the cover image. Of NAR'17 web-server issue; DSSR v1.7.6-2018mar22 is out, featuring an analysis/annotation of G-quadruplexes, and the. Messages from the site administrator on 3DNA. In Re: Highlights of recent. On February 02, 2018, 02:13:42 am. Request for new features. In Re: Rebuild DNA structur. On November 06, 2017, 09:06:39 am. In Re: Trouble running 3DNA.

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Default Web Site Page

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Clan x86 - Index

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