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Gendoo - Gene, Disease Features Ontology-based Overview System

Gene, Disease Features Ontology-based Overview System. Provides keywords including diseases, drugs and biological phenomena related to genes and diseases of interests. Gene → . Gene → Candidate → Related diseases, drugs, . Disease (OMIM) → . Disease (OMIM) → Candidate → Related drugs, tissues, biological phenomena (MeSH), . OMIM ID(s)/Disease Names (OMIM title):. Keywords (MeSH) → . MeSH (keywords of diseases, drugs, and so on) → Candidate → Related genes, diseases (OMIM). The blog of Gendoo. The list of...

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Gendoo - Gene, Disease Features Ontology-based Overview System | gendoo.dbcls.jp Reviews
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Gene, Disease Features Ontology-based Overview System. Provides keywords including diseases, drugs and biological phenomena related to genes and diseases of interests. Gene → . Gene → Candidate → Related diseases, drugs, . Disease (OMIM) → . Disease (OMIM) → Candidate → Related drugs, tissues, biological phenomena (MeSH), . OMIM ID(s)/Disease Names (OMIM title):. Keywords (MeSH) → . MeSH (keywords of diseases, drugs, and so on) → Candidate → Related genes, diseases (OMIM). The blog of Gendoo. The list of...
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Gendoo - Gene, Disease Features Ontology-based Overview System | gendoo.dbcls.jp Reviews

https://gendoo.dbcls.jp

Gene, Disease Features Ontology-based Overview System. Provides keywords including diseases, drugs and biological phenomena related to genes and diseases of interests. Gene → . Gene → Candidate → Related diseases, drugs, . Disease (OMIM) → . Disease (OMIM) → Candidate → Related drugs, tissues, biological phenomena (MeSH), . OMIM ID(s)/Disease Names (OMIM title):. Keywords (MeSH) → . MeSH (keywords of diseases, drugs, and so on) → Candidate → Related genes, diseases (OMIM). The blog of Gendoo. The list of...

INTERNAL PAGES

gendoo.dbcls.jp gendoo.dbcls.jp
1

Allelic heterogeneity

http://gendoo.dbcls.jp/resource/allelic.10.html

Source: OMIM morbidmap ('10-1-8). Stickler syndrome, type I. Achondrogenesis-hypochondrogenesis, type II. Epiphyseal dysplasia, multiple, with myopia and deafness. SED, Namaqualand type. Osteoarthritis with mild chondrodysplasia. Vitreoretinopathy with phalangeal epiphyseal dysplasia. Platyspondylic skeletal dysplasia, Torrance type. Avascular necrosis of the femoral head. Stickler sydrome, type I, nonsyndromic ocular. LMNA, LMN1, EMD2, FPLD, CMD1A, HGPS, LGMD1B. Emery-Dreifuss muscular dystrophy, AD.

2

Non-allelic heterogeneity

http://gendoo.dbcls.jp/resource/non-allelic.08.html

Source: OMIM morbidmap ('08-1-8). DIABETES MELLITUS, NONINSULIN-DEPENDENT; NIDDM. WFS1, WFRS, WFS, DFNA6. ENPP1, PDNP1, NPPS, M6S1, PCA1. ABCC8, SUR, PHHI, SUR1, HHF1, TNDM2. KCNJ11, BIR, PHHI, HHF2, TNDM3. TCF1, HNF1A, MODY3. TCF2, HNF2, MODY5, FJHN. RETN, RSTN, FIZZ3. HNF4A, TCF14, MODY1. CHI3L1, GP39, YKL40. DRD3, ETM1, FET1. SDC3, SYND3, SDCN. PPARG, PPARG1, PPARG2. PPARGC1B, PGC1B, PERC. ENPP1, PDNP1, NPPS, M6S1, PCA1. AGRP, ART, AGRT. RNASEL, RNS4, PRCA1, HPC1. KLF6, COPEB, BCD1, ZF9. ATM, ATA, AT1.

3

Non-allelic heterogeneity

http://gendoo.dbcls.jp/resource/non-allelic.09.html

Source: OMIM morbidmap ('09-1-8). WFS1, WFRS, WFS, DFNA6. ENPP1, PDNP1, NPPS, M6S1, PCA1. ABCC8, SUR, PHHI, SUR1, HHF1, TNDM2. KCNJ11, BIR, PHHI, HHF2, TNDM3. TCF1, HNF1A, MODY3. TCF2, HNF2, MODY5, FJHN. RETN, RSTN, FIZZ3. HNF4A, TCF14, MODY1. CHI3L1, GP39, YKL40. DRD3, ETM1, FET1. SDC3, SYND3, SDCN. PPARG, PPARG1, PPARG2. PPARGC1B, PGC1B, PERC. ENPP1, PDNP1, NPPS, M6S1, PCA1. AGRP, ART, AGRT. RNASEL, RNS4, PRCA1, HPC1. KLF6, COPEB, BCD1, ZF9. CD82, SAR2, KAI1, ST6. TCF2, HNF2, MODY5, FJHN. ATM, ATA, AT1.

4

Gendoo - Relevant features

http://gendoo.dbcls.jp/cgi-bin/gendoo.cgi?geneid=351&taxonomy=human

Genes → Relevant diseases, drugs, . Amyloid beta (A4) precursor protein. 8594; Tree View. Cerebral Amyloid Angiopathy, Familial. Disease Models, Animal. Myositis, Inclusion Body. Myopathies, Structural, Congenital. Amyloid Neuropathies, Familial. Simian Acquired Immunodeficiency Syndrome. Precursor B-Cell Lymphoblastic Leukemia-Lymphoma. Carcinoma, Squamous Cell. Leukemia, Erythroblastic, Acute. Lymphoma, Large B-Cell, Diffuse. Colorectal Neoplasms, Hereditary Nonpolyposis. 8594; Tree View. Transforming ...

5

Gendoo - ヘルプ

http://gendoo.dbcls.jp/help/help-ja.html

Verview system) は、 遺伝子や疾患について、関連する疾患や薬剤、生命現象、臓器などの情報を キーワードで表示するシステムです。 キーワード MeSH terms 疾患、薬剤、生命現象、臓器. Gendooは、 High-scoring list ランキングリスト と Hierarchical-tree view 階層構造表示 の 2つの結果画面があります。 初期画面は High-scoring list です。 Gene ID ならGene ID(s)欄に、OMIM IDならOMIM ID(s)欄にIDを入力します。 複数のスコアを勘案するときのために、情報利得 (information gain) でも スコアリングしていますが、参考程度でよいかと思います。 Tree view をクリックすることにより 階層構造表示 hierarchical-tree view で結果を表示します。 High-scoring List をクリックすることにより、 hish-scoring list ランキングリスト 表示に戻ります。

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lifesciencedb.mext.go.jp lifesciencedb.mext.go.jp

過去の研究成果・プレス発表一覧|統合データベースプロジェクト

http://lifesciencedb.mext.go.jp/pressall.html

へ、マウス C57BL/6N系統 のBACライブラリーを構成するクローンの末端配列情報のデータベース Mouse B6N BAC Clone Database. へ、トマト品種マイクロトムのBACライブラリーを構成するクローンの末端配列情報のデータベース Micro-Tom BAC End Sequence Database. へ、131の化合物をラット個体およびラット ヒト肝細胞へ曝露した際の遺伝子発現と毒性のデータベース Open TG-GATEs. 日本原子力研究開発機構 玉田太郎グループリーダー 岡崎伸生研究員 を追加しました。 へ、プラナリアの神経回路形成に関わる遺伝子群の単一細胞での発現情報と、Whole-mount in situ hybridizationおよび組織免疫染色による画像データを収録したデータベース Plabrain DB. に新しく辞書が追加され、学術用語集の農学編、植物学編、化学編 増訂 2 版 、歯学編 増訂版 、薬学編、 動物学編 増訂版 が利用できるようになりました。 文科省 ゲノム 研究報告書 全文検索. 旧 ゲノム ポストゲノム主要プロジェクト一覧 に、文部科学...

dbcls.rois.ac.jp dbcls.rois.ac.jp

Gendoo | DBCLS

http://dbcls.rois.ac.jp/en/services/sequencing/gendoo

DBCLS Database Center for Life Science. AOE (All Of gene Expression). OntoFinder & OntoFactory. Gendoo provides keywords including diseases, drugs and biological phenomena related to genes and diseases of interests. Http:/ gendoo.dbcls.jp/. Nakazato, T., Bono, H., Matsuda, H., & Takagi, T. (2009). Gendoo: functional profiling of gene and disease features using MeSH vocabulary. Nucleic acids research, gkp483. AOE (All Of gene Expression). OntoFinder & OntoFactory. Database Center for Life Science.

lifesciencedb.jp lifesciencedb.jp

LSDB Lab. - ライフサイエンス統合データベースセンター

http://lifesciencedb.jp/lab

Survey of Read Archives). 統合TV 準備中 ] [. Sequence read archive データの目次. Kusarinoko: Search SRA Entries with PubMed Article). 統合TV 準備中 ] [. 公共データベースで公開されている、次世代シーケンサの配列データのメタデータ データについて記述したデータ、実験手法やサンプルなど を検索 閲覧するための インターフェース. 統合TV 準備中 ] [. EST、GeneChip、CAGE、RNA-seq の4種類の異なる手法によって得られた 体の組織 臓器の遺伝子発現データを並列に表示し、 遺伝子発現解析を行う上で基準となるリファレンスとして利用することを 目的とした遺伝子発現データベース。 Gene, Disease Features Ontology-based Overview System). 統合TV 準備中 ] [. 統合TV 準備中 ] [.

wg.biosciencedbc.jp wg.biosciencedbc.jp

sras_survey_of_read_archives [実務者連絡会]

https://wg.biosciencedbc.jp/doku.php/sras_survey_of_read_archives

Sras survey of read archives. Sras survey of read archives. Sras survey of read archives. SRAs Survey of Read Archives. Http:/ sra.dbcls.jp/. 以外にも、 Gendoo (Gene, Disease Features Ontology-based Overview System). は、関心のある遺伝子 遺伝子セット や疾患を検索キーワードとして、 MeSH. Takinaka, T., Mizuguchi, H., Matsuda, H., Bono, H., and Asogawa, M., BioCompass: A novel functional inference tool that utilizes MeSH hierarchy to analyze groups of genes,. 1): 53-61, 2008. PubMed. Suppl 2) (Web Server Issue):W166-W169 2009. PubMed.

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Gene, Disease Features Ontology-based Overview System. Provides keywords including diseases, drugs and biological phenomena related to genes and diseases of interests. Gene → . Gene → Candidate → Related diseases, drugs, . Disease (OMIM) → . Disease (OMIM) → Candidate → Related drugs, tissues, biological phenomena (MeSH), . OMIM ID(s)/Disease Names (OMIM title):. Keywords (MeSH) → . MeSH (keywords of diseases, drugs, and so on) → Candidate → Related genes, diseases (OMIM). The blog of Gendoo. The list of...

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