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GENEMO Search

CEpBrowser (Comparative Epigenome Browser) is a gene-centric genome browser that visualize the genomic features of multiple species with color-coded orthologous regions, aiding users in comparative genomic research. The genome browser is adapted from UCSC Genome Browser and the orthologous regions are generated from cross-species lift-over pairs.

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CEpBrowser (Comparative Epigenome Browser) is a gene-centric genome browser that visualize the genomic features of multiple species with color-coded orthologous regions, aiding users in comparative genomic research. The genome browser is adapted from UCSC Genome Browser and the orthologous regions are generated from cross-species lift-over pairs.
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GENEMO Search | genemo.org Reviews

https://genemo.org

CEpBrowser (Comparative Epigenome Browser) is a gene-centric genome browser that visualize the genomic features of multiple species with color-coded orthologous regions, aiding users in comparative genomic research. The genome browser is adapted from UCSC Genome Browser and the orthologous regions are generated from cross-species lift-over pairs.

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GeNemo Manual

http://www.genemo.org/genemo-assets/manual_genemo.html

Choose Epigenetic Data Sets to Search. Exporting Results for Other Tools. In GeNemo Search, you can easily search similar regions among Encyclopedia of DNA Elements. ENCODE) and mouseENCODE database entries in human or mouse, including chromatin accessibility, histone modification, transcription factor binding sites and DNase-seq peaks. Similar regions are defined as the region with a local maximum similarity value. Figure 1 below shows the results from GeNemo Search. To learn more about ENCODE and mouse...

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systemsbio.ucsd.edu systemsbio.ucsd.edu

Zhong Lab - Software

http://systemsbio.ucsd.edu/software.html

4D Nucleome web portal. This web portal is the first entry point for biomedical researchers and scientists to the 4D Nucleome (4DN) network. 4DN resources, data, and protocols can be retrieved through this web portal. Single cell transcriptome browser. Single cell browser organizes and visualizes single cell RNA-seq datasets. Single cell data of mouse oocytes and preimplantation embryos are pre-loaded in this browser. The web-based comparative epigenome browser ( CEpBrowser. PerEditor changes the referen...

systemsbio.ucsd.edu systemsbio.ucsd.edu

Zhong Lab - Publications

http://systemsbio.ucsd.edu/publication.html

Mapping RNA-RNA interactome and RNA structure in vivo by MARIO. Tri C Nguyen, Xiaoyi Cao, Pengfei Yu, Shu Xiao, Jia Lu, Fernando H. Biase, Bharat Sridhar, Norman Huang, Kang Zhang, Sheng Zhong. Lens regeneration using endogenous stem cells with gain of visual function. 531: 323-328. Abstract. GeNemo: a search engine for web-based functional genomic data. Yongqing Zhang, Xiaoyi Cao, Sheng Zhong. In press. Text. News coverage: HIT Consultant. Fernando H. Biase, Xiaoyi Cao, Sheng Zhong. Comparative epigenom...

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GENEMO Search

To navigate GeNemo Browser:. On any tracks or the coordinates to move left / right. Move mouse cursor onto the coordinates. To zoom in / out.

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GeneMOb Home

Genemob was founded in March 2006 in Pleasant Valley, NY, to develop innovative bioinformatics software. Our first product was Gene Mobile Objects, or GeneMOb. 8212; a Java software framework designed to facilitate integration and sharing of information about genes. GeneMOb was deployed in two configurations: as a stand-alone desktop application backed by Java DB, and as a distributed application using Remote Method Invocation (RMI), Java Web Start, and MySQL database. Last updated January 31, 2015.

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