genepi.med.utah.edu

Department of Genetic Epidemiology

Campus: a to z index. Information About Participating In One of Our Studies. Information On Our Faculty. Supplemental Materials To Publications. Alun Thomas' Home Page / Software Demos. Welcome to Genetic Epidemiology. Drop a line to:. Our web site has changed: Click here for the new Genetic Epidemiology! 2007 The University of Utah. 391 Chipeta Way - Suite D. Salt Lake City, UT 84108-1266. The University of Utah.

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Department of Genetic Epidemiology | genepi.med.utah.edu Reviews

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Campus: a to z index. Information About Participating In One of Our Studies. Information On Our Faculty. Supplemental Materials To Publications. Alun Thomas' Home Page / Software Demos. Welcome to Genetic Epidemiology. Drop a line to:. Our web site has changed: Click here for the new Genetic Epidemiology! 2007 The University of Utah. 391 Chipeta Way - Suite D. Salt Lake City, UT 84108-1266. The University of Utah.

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1 directory

2 calendar

3 class information

4 genie

5 pedgenie

6 pcatag

7 hapmc

8 nlm1 wiki

9 webmail

10 university of utah

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Department of Genetic Epidemiology | genepi.med.utah.edu Reviews

https://genepi.med.utah.edu

Campus: a to z index. Information About Participating In One of Our Studies. Information On Our Faculty. Supplemental Materials To Publications. Alun Thomas' Home Page / Software Demos. Welcome to Genetic Epidemiology. Drop a line to:. Our web site has changed: Click here for the new Genetic Epidemiology! 2007 The University of Utah. 391 Chipeta Way - Suite D. Salt Lake City, UT 84108-1266. The University of Utah.

INTERNAL PAGES

genepi.med.utah.edu

1

Class Information

http://genepi.med.utah.edu/class.html

2

hapMC Home Page

http://genepi.med.utah.edu/Genie/hapMCDetail.html

Java -jar hapmc.jar hapMC rgenfile[.rgen]. Detailed description of .rgen XML file. All hapMC Example Files. Instructions to run hapMC. 1 Java 1.6 JRE must be installed on your system ( Download here. To check if Java is installed go to a command prompt and type. To check the Java version installed go to a command prompt and type. 2 Download hapmc.jar. 3 Create .rgen and .dat files. Examples can be found here. 4 Go to the directory with Genie.jar and type. Java -jar hapmc.jar hapMC .rgen file name. For la...

3

PCAtag

http://genepi.med.utah.edu/PCAtag/index.html

Software for Selecting Tagging-SNPs using Principal Component Analysis. Welcome to PCAtag 2.1. To be able to comprehensively test the role of candidate genes in association studies the selection of informative SNPs is paramount. Specifically, it is important to select tagging-SNPs (tSNPs) that represent a large portion ( 90%) of the genetic variation of a gene. Here we describe a new software tool, PCAtag. That performs tSNP selection using principal component analysis (PCA). Algorithms used by PCAtag.

4

GenEpi_index

http://genepi.med.utah.edu/genepi/GenEpi_index.htm

The Division of Genetic Epidemiology at the University of Utah performs research which we hope will someday improve the lives of millions of people who are affected with common diseases each year. Our goal is to understand and identify the genetic origin of common diseases. Knowledge about inherited predisposition to diseases will lead to the ability of health care professionals to treat, and eventually prevent, these illnesses with greater success. University of Utah School of Medicine.

5

PedGenie Description of Functionality

http://genepi.med.utah.edu/Genie/PedGenieDetail.html

PedGenie is now part of our new Genie. Package. It function as an analysis option of the new package. The following tests can be performed:. Genotype-based Chi-square trend test. Genotype-based with Multiple studies CMH Chi-squared test. Genotype-based with Multiple studies CMH Chi-squared trend test. Allele based odds ratio. Genotype-based odds ratio with confidence intervals. Allele based odds ratio with confidence intervals. Genotype-based with Multiple studies meta odds ratio. Difference in means test.

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Department of Genetic Epidemiology

Campus: a to z index. Information About Participating In One of Our Studies. Information On Our Faculty. Supplemental Materials To Publications. Alun Thomas' Home Page / Software Demos. Welcome to Genetic Epidemiology. Drop a line to:. Our web site has changed: Click here for the new Genetic Epidemiology! 2007 The University of Utah. 391 Chipeta Way - Suite D. Salt Lake City, UT 84108-1266. The University of Utah.

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