geno2pheno.org

Geno2pheno resistance

Geno2pheno [resistance] 3.4. Welcome to geno2pheno[resistance] version 3.4. This version features a completely new backend with improved alignment functionality. As this backend is about 10x faster than the old one, a total of 20 sequences can now be analyzed simultaneously. Etravirine and rilpivirine resistance predictions, as well as the scored mutations for these predictions, stem from rules-based drug-resistance interpretation models by HIV-GRADE. Further, new models. Do not use patient names! In cas...

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Geno2pheno resistance | geno2pheno.org Reviews

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Geno2pheno [resistance] 3.4. Welcome to geno2pheno[resistance] version 3.4. This version features a completely new backend with improved alignment functionality. As this backend is about 10x faster than the old one, a total of 20 sequences can now be analyzed simultaneously. Etravirine and rilpivirine resistance predictions, as well as the scored mutations for these predictions, stem from rules-based drug-resistance interpretation models by HIV-GRADE. Further, new models. Do not use patient names! In cas...

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6 resistance

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Geno2pheno resistance | geno2pheno.org Reviews

https://geno2pheno.org

Geno2pheno [resistance] 3.4. Welcome to geno2pheno[resistance] version 3.4. This version features a completely new backend with improved alignment functionality. As this backend is about 10x faster than the old one, a total of 20 sequences can now be analyzed simultaneously. Etravirine and rilpivirine resistance predictions, as well as the scored mutations for these predictions, stem from rules-based drug-resistance interpretation models by HIV-GRADE. Further, new models. Do not use patient names! In cas...

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hbv.geno2pheno.org

Geno2pheno hbv

Geno2pheno [hbv] 2.0. This is the new service geno2pheno[hbv]. Although we did several test-runs, we cannot guarantee for perfect stability at the moment. In case you observe any problems, please don't hesitate to contact us ( &#112&#114&#97&#98&#104&#97&#118&#107&#64&#109&#112&#105&#45&#105&#110&#102&#46&#109&#112&#103&#46&#100&#101. Domain of the pol-gene and the SHB. No clinical decision should be based only on the result of the used algorithm. Do not use patient names! 2 HBV sequence containing the.

structure.geno2pheno.org

Geno2pheno structure

This software has gone through initial testing in the developer lab which is the basis for the publication (cite PLOS CB paper). The software has not yet been submitted to routine clinical testing. If you require software that has been submitted to routine clinical testing please turn to the software offers under the tab "Services". Do not use patient names! 2 Sequence containing the. V3 region of gp120:. Upload from file (plain sequence or FASTA format):. Switch to vertical layout.

history.geno2pheno.org

Geno2pheno history

This is the new service geno2pheno[history]. Although we did several test-runs, we cannot guarantee for perfect stability at the moment. In case you observe any problems, please don't hesitate to contact us ( history@geno2pheno.org. On submitting below a sequence containing the History region of the HIV-1 pol gene, you will obtain a sequence alignment to the reference strain HXB2 and a prediction whether the corresponding virus is has mutations associated with resistance to history inhibitors.

coreceptor-hiv2.geno2pheno.org

Geno2pheno coreceptor-hiv2

Geno2pheno [coreceptor-hiv2] 1.0. On submitting a sequence containing the V3 region of the HIV-2 envelope protein gp105 below, you will obtain a sequence alignment to the reference strain Mac239 ( M33262. And a prediction whether the corresponding virus is capable of using CXCR4 as a coreceptor (R5/X4 or X4 variants) or not (R5 variants). Do not use patient names! Please select the FPR cutoff for the detection of CXCR4 usage. Ndash; please select –. Optimized cutoff (FPR = 5%). Cutoff at FPR = 1%.

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geno2pheno.org

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Geno2pheno resistance

http://www.geno2pheno.org/cgi-bin/g2p_theo_help.pl

Geno2pheno [resistance] 3.4. Welcome to geno2pheno[resistance] version 3.4. This version features a completely new backend with improved alignment functionality. As this backend is about 10x faster than the old one, a total of 20 sequences can now be analyzed simultaneously. Etravirine and rilpivirine resistance predictions, as well as the scored mutations for these predictions, stem from rules-based drug-resistance interpretation models by HIV-GRADE. Further, new models. Do not use patient names! In cas...

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genafor.org

Genafor Services

http://www.genafor.org/services.php

Welcome to Genafor − Open Services for Medical Research. G2P services access statistics. Estimating phenotypic drug resistance from HIV-1 genotypes associated with resistance to PRO and RT inhibitors. Genotypic prediction of coreceptor usage. Predicting HIV-1 coreceptor usage from massively parallel sequencing data. Genotypic prediction associated with resistance to integrase inhibitors. HIV-1-Gag-based genotypic prediction of PI and MI resistance. Genotypic prediction of HBV drug resistance.

coreceptor-hiv2.geno2pheno.org

Geno2pheno coreceptor-hiv2

http://coreceptor-hiv2.geno2pheno.org/index.php

Geno2pheno [coreceptor-hiv2] 1.0. On submitting a sequence containing the V3 region of the HIV-2 envelope protein gp105 below, you will obtain a sequence alignment to the reference strain Mac239 ( M33262. And a prediction whether the corresponding virus is capable of using CXCR4 as a coreceptor (R5/X4 or X4 variants) or not (R5 variants). Do not use patient names! Please select the FPR cutoff for the detection of CXCR4 usage. Ndash; please select –. Optimized cutoff (FPR = 5%). Cutoff at FPR = 1%.

genafor.org

Genafor Homepage

http://www.genafor.org/arevir2012.php

Welcome to Genafor − Open Services for Medical Research. Monitoring von resistenten HIV bei frisch infizierten und chronisch infizierten HIV-Patienten in Deutschland. When: 03.05. - 04. 05. 2012 (9:00 am â 18:30 pm). Where: Stiftung caesar, Ludwig Erhard Allee 2, 53175 Bonn. For registration and accommodation. Our aim is the prediction of the most likely best working drug combinations. For that reason, geno2pheno-THEO ( www.genafor.org. New drugs in new classes require equivalent diagnostics. Within ...

eucohiv.org

Eucohiv - Geno2pheno co-receptor

http://www.eucohiv.org/geno2pheno-co-receptor

EUROPEAN HIV CORECEPTOR STUDY PANEL. Participation in the database. The EucoHIV has the objective to provide a validated and refined version of the geno2pheno[coreceptor] model and server that is targeted to replacing the classical model used today. In an exploratory study the prediction of viral tropism has been based on more detailed laboratory measurements of the efficiency of viral cell entry based on viral and cellular determinants. This model is currently being refined [6]. 2 Sander, O., et al&...

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Geno2pheno resistance

Geno2pheno [resistance] 3.4. Welcome to geno2pheno[resistance] version 3.4. This version features a completely new backend with improved alignment functionality. As this backend is about 10x faster than the old one, a total of 20 sequences can now be analyzed simultaneously. Etravirine and rilpivirine resistance predictions, as well as the scored mutations for these predictions, stem from rules-based drug-resistance interpretation models by HIV-GRADE. Further, new models. Do not use patient names! In cas...

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