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genome-mirror.bscb.cornell.edu

UCSC Genome Browser Home

UCSC Genome Browser

http://genome-mirror.bscb.cornell.edu/

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UCSC Genome Browser Home | genome-mirror.bscb.cornell.edu Reviews
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UCSC Genome Browser
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1 genome
2 genome browser
3 human genome
4 genome assembly
5 Blat
6 UCSC
7 bioinformatics
8 gene prediction
9 SNP
10 SNPs
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genomes,blat,tables,gene sorter,visigene,session,genome browser,ebola,table browser,in silico pcr,genome graphs,galaxy,utilities,downloads,release log,custom tracks,cancer browser,microbial genomes,encode,neandertal,mirrors,training,blog,credits,cite us
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UCSC Genome Browser Home | genome-mirror.bscb.cornell.edu Reviews

https://genome-mirror.bscb.cornell.edu

UCSC Genome Browser

INTERNAL PAGES

genome-mirror.bscb.cornell.edu genome-mirror.bscb.cornell.edu
1

Conditions of Use - UCSC Genome Browser

http://www.genome-mirror.bscb.cornell.edu/conditions.html

The UCSC Genome Browser was created by the Genome Bioinformatics Group. The Genome Browser and Blat software are free for academic, nonprofit, and personal use. A license. Is required for commercial use. Us if you use the Genome Browser software or data in a publication or web page. Program-driven use of this software is limited to a maximum of one hit every 15 seconds and no more than 5,000 hits per day. Usage restrictions for genome sequence data are noted within the species sections on the Credits.

2

UCSC Genome Browser: Staff

http://www.genome-mirror.bscb.cornell.edu/staff.html

UCSC Genome Browser Project Team. Engineeering and Management Staff. Research Scientist, Co-PI and Architect of the UCSC Genome Browser, the ENCODE DCC, and the CIRM Stem Cell Genomics Data Management Center. Design and implementation of the Genome Browser. Sequence search tool. Author of the the UCSC Genes. Annotations, the Gene Sorter. Chaining and netting programs, bigWig and bigBed formats. The In Silico PCR. Tool, and the GigAssembler. Genome Browser QA, mailing list support. Postdoc - Tools to mine...

3

UCSC Genome Browser: News Archives

http://www.genome-mirror.bscb.cornell.edu/goldenPath/newsarch.html

29 October 2014 - Genome Browser in a Box (GBiB). Sometimes you just want to keep your genomics data to yourself. Have you ever hesitated when uploading your data set into the UCSC Genome Browser? If so, you'll be happy to know that we have created a stand-alone personal version: Genome Browser in a Box (GBiB). If you have sensitive genomics data that you would like to view securely on your own laptop in the context of the UCSC Genome Browser, GBiB is for you. You can read more about GBiB on our blog.

4

Genome Browser Licensing

http://www.genome-mirror.bscb.cornell.edu/license

Obtaining a Commercial License for the Genome Browser. The Genome Browser binaries and source code are freely available for academic, nonprofit, and personal use. A license is required for commercial download and installation of most Genome Browser binaries and source code, with the exception of the items in the following directories that are freely available for all uses:. Kent/src/utils (includes big* tools). To purchase a license visit the Genome Browser store. Read and sign the licensing agreement.

5

Genome Browser in a Box - UCSC Genome Browser

http://www.genome-mirror.bscb.cornell.edu/goldenPath/help/gbib.html

Genome Browser in a Box User Guide. What is Genome Browser in a Box (GBiB)? Getting Started: Setting up Genome Browser in a Box. Using Genome Browser in a Box. Improving Speed and Performance. Updating Genome Browser in a Box. Viewing Your Own Data. Sharing Genome Browser in a Box with Colleagues. User Accounts and Sessions. UCSC blog post about GBiB. OpenHelix blog post about GBiB. What is Genome Browser in a Box? Differences between GBiB and the Genome Browser. For more background on GBiB see: Haeussle...

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mezeylab.cb.bscb.cornell.edu mezeylab.cb.bscb.cornell.edu

Jason Mezey Lab Home

http://mezeylab.cb.bscb.cornell.edu/Software.aspx

Skip to main content. Department of Biological Statistics and Computational Biology. Department of Biological Statistics and Computational Biology. SupportMix is still under development so please check back for updates. For performance or other issues contact the author Dr. Larsson Omberg (lom at larssono.com). Please follow this link to download SupportMix (ver. Jul. 18, 2012). Update July 18, 2012: A bug was found in SupportMix related to plot labeling, please download the updated version. Expanding on...

genomewiki.ucsc.edu genomewiki.ucsc.edu

Browser Mirrors - Genomewiki

http://genomewiki.ucsc.edu/index.php/Browser_Mirrors

Please note, the information on this page may be useful, however it is becoming dated with time. The currently recommended UCSC procedures can be found in the source tree: scripts. To fully utilize scripts such as these, you should be familiar with shell programming and you should be able to understand what the scripts are doing so you can customize them to your particular installation. They are not going to work blindly out of the box. Also contains some useful information. Where doAll.sh is a simpl...

genomewiki.cse.ucsc.edu genomewiki.cse.ucsc.edu

Browser Mirrors - Genomewiki

http://genomewiki.cse.ucsc.edu/index.php/Browser_Mirrors

Please note, the information on this page may be useful, however it is becoming dated with time. The currently recommended UCSC procedures can be found in the source tree: scripts. To fully utilize scripts such as these, you should be familiar with shell programming and you should be able to understand what the scripts are doing so you can customize them to your particular installation. They are not going to work blindly out of the box. Also contains some useful information. Where doAll.sh is a simpl...

k9dna.org k9dna.org

Dog Genetics Resources | Adam Boyko Laboratory

http://www.k9dna.org/genetics-resources

Skip to main content. Every year, dogs are are the focus of numerous scientific research projects to further our understanding of the genetic basis of phenotypic diversity and disease. Dogs are an increasingly important model system for understanding human genetic disease due largely to their unique breed structure and the quality veterinary care received by many dogs that are living in an environment shared by humans. Important Articles By Year. American Kennel Club - Complete Breed List.

mezeysoftware.bscb.cornell.edu mezeysoftware.bscb.cornell.edu

CornellDGRP - MezeyLabWiki

http://mezeysoftware.bscb.cornell.edu/index.php/CornellDGRP

Genetic Reference Panel (DGRP) is a set of inbred lines developed by Dr. Trudy Mackay. NC State) and made available to the broader Drosophila. Community through the Bloomington Stock Center. The genomes of these (mostly) homozygous lines have been sequenced by Illumina paired-end short read at the Baylor HGSC. 3CPG) our group is developing software and other resources to enable these studies. We are still in the process of organizing this initiative and we will be serving up new items in the coming m...

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Genome Marketplace: Home

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UCSC Genome Browser Home

About the UCSC Genome Bioinformatics Site. Welcome to the UCSC Genome Browser website. This site contains the reference sequence and working draft assemblies for a large collection of genomes. It also provides portals to ENCODE. Data at UCSC (2003 to 2012) and to the Neandertal. Project. Download or purchase the Genome Browser source code, or the Genome Browser in a Box ( GBiB. At our online store. We encourage you to explore these sequences with our tools. The Genome Browser. The Genome Browser project ...

genome-mirror.cshl.edu genome-mirror.cshl.edu

UCSC Genome Browser Home

About the UCSC Genome Bioinformatics Site. Welcome to the UCSC Genome Browser website. This site contains the reference sequence and working draft assemblies for a large collection of genomes. It also provides portals to ENCODE. Data at UCSC (2003 to 2012) and to the Neandertal. Project. Download or purchase the Genome Browser source code, or the Genome Browser in a Box ( GBiB. At our online store. We encourage you to explore these sequences with our tools. The Genome Browser. The Genome Browser project ...

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GigaDB

GigaDB contains 444 discoverable, trackable, and citable datasets that have been assigned DOIs and are available for public download and use. Electrophysiology: Data relating to the flow of ions (ion current) in biological tissues and, in particular, to the electrical recording techniques that enable the measurement of this flow. Epigenomic: methylation and histone modification data. Genomic: genetic and genomic data e.g. sequence and assemblies. Neuroscience: Data from neuroscience studies. Supporting d...

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UCSC Genome Browser Home

Local mirror of the UCSC Genome Browser in Aarhus, Denmark. Local Mirror: http:/ genome-mirror.genomedk.au.dk/. Track Hubs for Ancient epigenomics. Supporting material for the paper Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome. Track Hub: http:/ moma.ki.au.dk/trackHubs/ancientNuc/hub.txt. Load the Track Hub in local mirror. Track Hubs for conserved human noncoding RNAs. Supporting material for the paper Identification of expressed and conserved human noncoding RNAs.

genome-now.com genome-now.com

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Preemptive healthcare is key to survival. Preemptive knowledge is key. We can help identify a set of people who are more likely to acquire a set of disease. Response-to-therapy can help choose which treatment will be the best. This could potentially save monetarily and also be a life saver. Huge database to to do such analysis.

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