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1000 Genomes Project - what have been done so far. 1000 Genomes Project - what have been done so far. Retrieved from " http:/ geuvadiswiki.crg.es/index.php? RNAseq Data and Analysis. Sandbox dataset for testing. This page was last modified on 8 August 2012, at 22:02. This page has been accessed 25,043 times.

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1000 Genomes Project - what have been done so far. 1000 Genomes Project - what have been done so far. Retrieved from http:/ geuvadiswiki.crg.es/index.php? RNAseq Data and Analysis. Sandbox dataset for testing. This page was last modified on 8 August 2012, at 22:02. This page has been accessed 25,043 times.
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Geuvadis MediaWiki | geuvadiswiki.crg.es Reviews

https://geuvadiswiki.crg.es

1000 Genomes Project - what have been done so far. 1000 Genomes Project - what have been done so far. Retrieved from " http:/ geuvadiswiki.crg.es/index.php? RNAseq Data and Analysis. Sandbox dataset for testing. This page was last modified on 8 August 2012, at 22:02. This page has been accessed 25,043 times.

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1

Talk:Main Page - Geuvadis MediaWiki

http://geuvadiswiki.crg.es/index.php/Talk:Main_Page

Could we remove the 1000 Genomes page? It's already outdated, and they have their own website where the most complete and recent info can be found. Retrieved from " http:/ geuvadiswiki.crg.es/index.php? RNAseq Data and Analysis. Sandbox dataset for testing. This page was last modified on 8 August 2012, at 22:00. This page has been accessed 2,282 times.

2

WP5: ExomeSeq - Geuvadis MediaWiki

http://geuvadiswiki.crg.es/index.php/WP5:_ExomeSeq

Retrieved from " http:/ geuvadiswiki.crg.es/index.php? RNAseq Data and Analysis. Sandbox dataset for testing. This page was last modified on 1 December 2011, at 16:53. This page has been accessed 893 times.

3

Differential Expression - Geuvadis MediaWiki

http://geuvadiswiki.crg.es/index.php/Differential_Expression

GO analysis reveal that these genes are mainly involved in cell adhesion processes. Exon inclusion levels were expressed as the Percentage Splice Index (PSI) [PMID:21876675,18978772], defined as the ratio between inclusion reads and inclusion reads plus exclusion reads. Differential analysis shows a relative low number of exons with population specific inclusion (Table Below and Figure File:Pedro PSI std0.15.pdf. 175 210 exons with at least one PSI value. END OF PUTATIVE TEXT. 1 176 (U:935, D:242). Numbe...

4

Basic miRNA analyses - Geuvadis MediaWiki

http://geuvadiswiki.crg.es/index.php/Basic_miRNA_analyses

This is a brief description at of the miRNA analyses which can be downloaded from ftp:/ ftp-private.ebi.ac.uk/upload/geuvadis/wp4 rnaseq/main project/analysis data/mirna/. The analyses were performed by the CRG SMARTAR (small RNA transcriptome analyzer) pipeline. To ensure that all sRNA datasets are comparable, datasets with read lengths longer than 36 nts were trimmed using the FASTX suite from the Greg Hannon lab ( http:/ hannonlab.cshl.edu/fastx toolkit/. A custom file with clade-specific miRNAs was g...

5

Splicing - Geuvadis MediaWiki

http://geuvadiswiki.crg.es/index.php/Splicing

Meta-page for all analyzes related to Splicing. Expression Variability across Individuals. Ubiquity vs. Specificity. Characterisation of Specifically Expressed and Processed Genes. Inter-Individual Variability of Splicing. Simple transcript variation measures. Boxplots (nr. expressed spliceforms) vs (nr. detected spliceforms) for all populations,. Linear regression of nr. expressed spliceform medians? Determine supremum of Shannon entropy medians / infimum of rel. expression level of major isoform? Histo...

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Blog | Lappalainen Lab | Functional Genomics @ NYGC

https://tllab.org/blog

Functional Genomics @ NYGC. The sound of a gene breaking. May 18, 2015. Equal contribution; corresponding authors. If you listened to your cells very carefully, would you be able to hear when a gene breaks? In a new paper in Science, we show that this is, in a way, possible: by analysis of huge RNA-sequencing data sets, we can detect cellular effects of protein-truncating variants in the genome. Trending: rare variants in human disease. In 2013, and the new GTEx project. Getting rid of the nonsense.

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RNA sequencing project

http://www.geuvadis.org/web/geuvadis/RNAseq-project

Ethical Social Legal Issues. Geuvadis RNA sequencing project of 1000 Genomes samples. The main paper presenting the data set and summarizing the key findings, with a focus on transcriptome variantion and its genetic component has been published in Nature in September 2013 by Lappalainen et al.: Transcriptome and genome sequencing uncovers functional variation in humans. http:/ dx.doi.org/10.1038/nature12531. Where quantifications and QTLs can be viewed, searched, and downloaded. Data access schema for Ge...

geuvadis.org geuvadis.org

RNA sequencing project

http://www.geuvadis.org/web/geuvadis/rnaseq-project;jsessionid=16BC828F8CE6FB96849988664A25B894

Ethical Social Legal Issues. Geuvadis RNA sequencing project of 1000 Genomes samples. The main paper presenting the data set and summarizing the key findings, with a focus on transcriptome variantion and its genetic component has been published in Nature in September 2013 by Lappalainen et al.: Transcriptome and genome sequencing uncovers functional variation in humans. http:/ dx.doi.org/10.1038/nature12531. Where quantifications and QTLs can be viewed, searched, and downloaded. Data access schema for Ge...

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Ethical Social Legal Issues. Caps Lock is on. Click here to Logout. ESGI Symposium on Functional Genomics and Metabolism Research. 21st and 22nd March 2013. Discussing whole genome sequencing in medical practice. From Genetic Discovery to Future Health. November 15th, 2012. International Congress of Human Genetics 2011. The Genomics of Common Diseases 2011. 3008 - 02.09 2011. 4th Paris Workshop on Genomic Epidemiology. May 30, 31 and June 1, 2011. Genetic European Variation in Health and Disease,. During...

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Geuvadis MediaWiki

1000 Genomes Project - what have been done so far. 1000 Genomes Project - what have been done so far. Retrieved from " http:/ geuvadiswiki.crg.es/index.php? RNAseq Data and Analysis. Sandbox dataset for testing. This page was last modified on 8 August 2012, at 22:02. This page has been accessed 25,043 times.

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Welkom bij 't Geuvelke! Onze club is gelegen op het domein "de Val" te Viversel nabij het circuit en het zwembad van Terlaemen. Er kan zowel individueel als in clubverband gevist worden. Door de aangesloten leden.