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Genomic Services Laboratory at HudsonAlpha

Genomic Services Laboratory website

http://gsl.hudsonalpha.org/

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PAGE TITLE
Genomic Services Laboratory at HudsonAlpha | gsl.hudsonalpha.org Reviews
<META>
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Genomic Services Laboratory website
<META>
KEYWORDS
1 about us
2 policies
3 publications
4 services
5 10x chromium
6 methylation
7 metagenomics
8 other dna services
9 library
10 sample requirements
CONTENT
Page content here
KEYWORDS ON
PAGE
about us,policies,publications,services,10x chromium,methylation,metagenomics,other dna services,library,sample requirements,platforms,software,wget/curl downloader,gui downloader,fastq merger,gsl unzip,bam2fastq,getting started,a prepared library
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Genomic Services Laboratory at HudsonAlpha | gsl.hudsonalpha.org Reviews

https://gsl.hudsonalpha.org

Genomic Services Laboratory website

INTERNAL PAGES

gsl.hudsonalpha.org gsl.hudsonalpha.org
1

Genomic Services Laboratory at HudsonAlpha

https://gsl.hudsonalpha.org/information/software/wget_curl_download

Wget and cURL Downloaders. We have updated the script to fix issues for users of certain versions of the Macintosh OSX operating systems who were having trouble downloading from our new download server. Files posted to the new server have a hashed, unpredictable URL, so this updated script will not request authentication for files posted to this download server. Bash gsl wget download.sh URL list file.txt. Bash gsl curl download.sh URL list file.txt. Requires cURL (standard on Mac OS X).

2

Genomic Services Laboratory at HudsonAlpha

https://gsl.hudsonalpha.org/information/sample

GSL pricing is based on the assumption that submitted samples can go straight into reactions, requiring little to no manipulation of samples by a technician. Therefore, any samples submitted that do not meet the requirements below will be subjected to a $25 surcharge per sample. If you have questions about our requirements, please contact us before isolating or preparing your samples for submission. For saliva collections, the GSL prefers Oragene Dx (for Diagnostics). For buccal swab submissions, we reco...

3

Genomic Services Laboratory at HudsonAlpha

https://gsl.hudsonalpha.org/information/faq

How long will it take to get my data? Why does everyone in my lab need a separate account? Can I run protocol X with less than the recommended amount of input material? Can I run protocol X with material that is not of the ideal integrity? What types of analysis can be provided by the GSL? How long does it take to run the sequencers? What is a BAM file? How are fastq files named? How can I visualize my alignments? What tools do you recommend for performing my own analysis? Were chosen to allow us to proc...

4

Genomic Services Laboratory at HudsonAlpha

https://gsl.hudsonalpha.org/information/rna

RNA Services Sequencing Data. The GSL offers RNA discovery and profiling services through next-generation sequencing and microarray analysis. Upon arrival to the GSL, all total RNA samples are evaluated for concentration by Qubit or Ribogreen and for integrity by 2100 Bioanalyzer or Caliper GX. Before submitting samples, please review the GSL sample submission requirements. The rRNA reduction process removes structural RNA from the total RNA population present in the sample. rRNA reduction is employe...

5

Genomic Services Laboratory at HudsonAlpha

https://gsl.hudsonalpha.org/information/software/bam2fastq

This software is no longer supported by the GSL. We recommend using Picard. S SamToFastq to accomplish this task. Is an efficient method for storing and sharing data from modern, highly parallel sequencers. While primarily used for storing alignment information, BAMs can (and frequently do) store unaligned reads as well. There are a growing number of general-purpose SAM/BAM manipulation programs, including SAMtools. The distribution and extract it with. Change into the extracted directory and run. If the...

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LINKS TO THIS WEBSITE

khaognosis.wordpress.com khaognosis.wordpress.com

LINKS – khaognosis

https://khaognosis.wordpress.com/2016/02/18/links

Let’s keep some helpful links of bioinformatics blogs and such. Bioinformatics Adventures in Unix:. Http:/ nix-bio.blogspot.gr/. Genomic services lab on hudsonAlpha. Https:/ gsl.hudsonalpha.org/index. Annotating a SAM file-best method auto thelw na kanw 😛. Http:/ seqanswers.com/forums/archive/index.php/t-11913.html. Extracting regions from .bam file using a .gff or .gtf file. Https:/ www.biostars.org/p/98407/. Https:/ www.biostars.org/p/102626/. Http:/ mosas.sysu.edu.cn/utr/. DNA functional data miner.

khaognosis.wordpress.com khaognosis.wordpress.com

khaognosis – khaognosis

https://khaognosis.wordpress.com/author/khaognosis

Why we have a motif in polyadenylation. As the title says, why we have the motif(s) we have in polyadenylation? The first idea is biochemistry, something we see here. Source: https:/ aghunt.wordpress.com/2009/05/14/where-polyadenylation-sirnas-and-dna-methylation-meet/. Https:/ aghunt.wordpress.com/2008/07/18/the-polyadenylation-complex-rna-binding-proteins/. Https:/ aghunt.wordpress.com/2008/06/05/the-polya-tail/. Let’s keep some helpful links of bioinformatics blogs and such. DNA functional data miner.

khaognosis.wordpress.com khaognosis.wordpress.com

Φεβρουάριος 2016 – khaognosis

https://khaognosis.wordpress.com/2016/02

Why we have a motif in polyadenylation. As the title says, why we have the motif(s) we have in polyadenylation? The first idea is biochemistry, something we see here. Source: https:/ aghunt.wordpress.com/2009/05/14/where-polyadenylation-sirnas-and-dna-methylation-meet/. Https:/ aghunt.wordpress.com/2008/07/18/the-polyadenylation-complex-rna-binding-proteins/. Https:/ aghunt.wordpress.com/2008/06/05/the-polya-tail/. Let’s keep some helpful links of bioinformatics blogs and such. DNA functional data miner.

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Genomic Services Laboratory at HudsonAlpha

The Genomic Services Lab offers cutting-edge genetic research tools to both academic and commercial customers. The GSL was established by Shawn Levy, Ph.D. upon his arrival at HudsonAlpha Institute for Biotechnology. Advantages of the GSL. We make no demands for authorship or data ownership. See our complete list of policies. We make extensive use of robotics to reduce hands-on time, minimize variation in handling, increase throughput, and ultimately reduce costs. GSL staff with any questions you may have.

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