homeodb.zoo.ox.ac.uk

HomeoDB: Homeobox Database

The homeobox genes are a large and diverse group of genes, many of which play important roles in the embryonic development of animals. Increasingly, homeobox genes are being compared between genomes in an attempt to understand the evolution of animal development. If you use HomeoDB, please cite the following publications:. Ying-Fu Zhong and Peter W H Holland (2011) HomeoDB2: functional expansion of a comparative homeobox gene database for evolutionary developmental biology. Evolution and Development.

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HomeoDB: Homeobox Database | homeodb.zoo.ox.ac.uk Reviews

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The homeobox genes are a large and diverse group of genes, many of which play important roles in the embryonic development of animals. Increasingly, homeobox genes are being compared between genomes in an attempt to understand the evolution of animal development. If you use HomeoDB, please cite the following publications:. Ying-Fu Zhong and Peter W H Holland (2011) HomeoDB2: functional expansion of a comparative homeobox gene database for evolutionary developmental biology. Evolution and Development.

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3 homeobox genes

4 homeobox domain

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6 domain

7 domains

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9 homeobox database

10 homeobox gene database

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human,homo sapiens,mouse,mus musculus,chicken,gallus gallus,frog,xenopus tropicalis,zebrafish,danio rerio,amphioxus,branchiostoma floridae,fruitfly,drosophila melanogaster,beetle,tribolium castaneum,honeybee,apis mellifera,nematode,caenorhabditis elegans

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HomeoDB: Homeobox Database | homeodb.zoo.ox.ac.uk Reviews

https://homeodb.zoo.ox.ac.uk

The homeobox genes are a large and diverse group of genes, many of which play important roles in the embryonic development of animals. Increasingly, homeobox genes are being compared between genomes in an attempt to understand the evolution of animal development. If you use HomeoDB, please cite the following publications:. Ying-Fu Zhong and Peter W H Holland (2011) HomeoDB2: functional expansion of a comparative homeobox gene database for evolutionary developmental biology. Evolution and Development.

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homeodb.zoo.ox.ac.uk

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HomeoDB: Homeobox Database

http://homeodb.zoo.ox.ac.uk/download.get

Search (gene symbol, e.g. HOX). Downloaded sequences will be in FASTA format:. Species Name Gene Symbol [HDn ]Belonging Family Name Belonging Class Name. Will be optional. When there are more then one homeodomain sequences in one gene, it will be included in the title as HD1, HD2, . Human CDX1 Cdx ANTP. Human DUX4 HD1 Dux PRD. Human DUX4 HD2 Dux PRD. And/or according to Classes or Families. Homeobox Gene Research Consortium. Marie Curie International Incoming Fellowship.

2

HomeoDB: Homeobox Database

http://homeodb.zoo.ox.ac.uk/compare.get

Search (gene symbol, e.g. HOX). Select Species to Compare. Select species to compare . Homeobox Gene Research Consortium. Marie Curie International Incoming Fellowship. Within the 7th European Community Framework Programme. The Collaboration of Center of Bioinformatics. Peking University, P.R. China,. And Evolution and Development Research Group. Department of Zoology, University of Oxford, UK, 2006.

3

HomeoDB: Homeobox Database

http://homeodb.zoo.ox.ac.uk/summary.get

Search (gene symbol, e.g. HOX). GRCh37 (hg19), GRC. C57BL/6J (NCBI Build 37), NCBI. Mouse Genome Sequencing Consortium. Gallus gallus-2.1, NCBI. Branchiostoma floridae v2.0, JGI. Release 5.30 (NCBI Build 9.4), NCBI. Tribolium castaneum 3.0 Assembly (Tcas 3.0), NCBI. Amel 4.5, NCBI. Genes Distribution in Classes. Number in bracket indicates number of psudogenes or unassigned sequences. 2011-05 Frog homeobox genes dataset added (HomeoDB v3.5). 2011-01 Chicken homeobox genes dataset added (HomeoDB v3.3).

4

HomeoDB: Homeobox Database

http://homeodb.zoo.ox.ac.uk/blast.get

Search (gene symbol, e.g. HOX). BLAST Search to HomeoDB. This implementation of BLAST allow you to search our database of homeobox gene using your own sequence as a query. However, remember that BLAST should not be used as a sole mean to identify or classify genes, particularly in large gene families. We recommend doing BLAST only as an initiate clue to a gene's identity, and following this with both molecular phylogenetics and analysis of synteny. Choose program to use :. Enter sequence below in FASTA.

5

HomeoDB: Homeobox Database

http://homeodb.zoo.ox.ac.uk/regulation.get

Search (gene symbol, e.g. HOX). Is part of HomeoDB. HomeoReg aims to collect information on experimentally-demonstrated regulatory interactions between non-coding RNA molecules (e.g. miRNA) and homeobox genes. Records: 1 to 10 of 46. First Prev Page 1 of 5. Lee SI. et al. 2011, Proc Natl Acad Sci U S A. Rotkrua P. et al. 2011, Int J Cancer. Zhang Y. et al. 2011, J Cell Mol Med. Dou LP, et al. 2011, Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi. Liu X et al. 2011, Biochem J. Kim BM, et al. 2011, Development.

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zoo-pholland.zoo.ox.ac.uk

Resources | J.W. Jenkinson Laboratory for Evolution and Development

https://zoo-pholland.zoo.ox.ac.uk/resources

Skip to main content. JW Jenkinson Laboratory for Evolution and Development. Listed here are datasets and resources produced by the laboratory. Some are open access; others are password-protected for use by members of the research group and collaborators. HomeoDB2: a searchable, BLASTable and downloadable database of homeobox sequences http:/ homeodb.zoo.ox.ac.uk/. GENOMIC AND TRANSCRIPTOMIC DATASETS. Illumina DNA sequence for Pantodon https:/ www.ncbi.nlm.nih.gov/bioproject/293272. Sample genome assembl...

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HomeoDB: Homeobox Database

The homeobox genes are a large and diverse group of genes, many of which play important roles in the embryonic development of animals. Increasingly, homeobox genes are being compared between genomes in an attempt to understand the evolution of animal development. If you use HomeoDB, please cite the following publications:. Ying-Fu Zhong and Peter W H Holland (2011) HomeoDB2: functional expansion of a comparative homeobox gene database for evolutionary developmental biology. Evolution and Development.

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