igm.cumc.columbia.edu

IGM

ATAV (Analysis Tool for Annotated Variants) is a statistical toolset that is designed to detect complex disease-associated rare genetic variants by performing association analysis on annotated variants derived from whole-genome or whole-exome sequencing data. ERDS is designed for detection of copy number variants (CNVs) on human genomes from next generation sequence data, utilizing information from read depth of short reads and SNV heterozygosity. MetaP performs a meta-analysis and combines the statistic...

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ATAV (Analysis Tool for Annotated Variants) is a statistical toolset that is designed to detect complex disease-associated rare genetic variants by performing association analysis on annotated variants derived from whole-genome or whole-exome sequencing data. ERDS is designed for detection of copy number variants (CNVs) on human genomes from next generation sequence data, utilizing information from read depth of short reads and SNV heterozygosity. MetaP performs a meta-analysis and combines the statistic...

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3 rvis genic intolerance

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6 dv auto

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9 metap

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IGM | igm.cumc.columbia.edu Reviews

https://igm.cumc.columbia.edu

ATAV (Analysis Tool for Annotated Variants) is a statistical toolset that is designed to detect complex disease-associated rare genetic variants by performing association analysis on annotated variants derived from whole-genome or whole-exome sequencing data. ERDS is designed for detection of copy number variants (CNVs) on human genomes from next generation sequence data, utilizing information from read depth of short reads and SNV heterozygosity. MetaP performs a meta-analysis and combines the statistic...

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IGM

Added by Nick Ren. ATAV 6.1.1. Added by Nick Ren. Added by Nick Ren. Webinar on Axis 2.0 with Daniel Millard at Axion Biosystems. Details of changes made and new options available in Axis 2.0. IGM's MEA system was upgraded around May 1, 2015. Added by Diana Hall. Added by Nick Ren. Project page for Mult-Electrode Array recording. All related tasks for Analysis Pipeline in BioInformatic Team.

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igm.cumc.columbia.edu

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WGAViewer

http://igm.cumc.columbia.edu/WGAViewer/index.php

Duke Institute for Genome Sciences and Policy. Center for Human Genome Variation. Center for HIV/AIDS Vaccine Immunology (CHAVI). A fast run for impatient users]. And other genome resources has shifted from upstream SNP-selection tasks to the downstream tasks of interpreting the observed genotype-phenotype associations ( Telenti and Goldstein 2006. Extension to the WGAViewer program. The rapidly evolving high-throughput DNA sequencing technologies have now allowed the fast generation of large amount of s...

2

MetaP, a program to combine P values

http://igm.cumc.columbia.edu/MetaP/metap.php

Duke Institute for Genome Sciences and Policy. Center for Human Genome Variation. Center for HIV/AIDS Vaccine Immunology. Duke IGSP Genomic Analysis Facility. MetaP: a program to combine P values. Oops It seems that your browser does not support the. Tag Sorry this program cannot run in this browser. You may want to install your java plug-in, or update your current browser, or switch to a new one. Here is a web page that you may find useful:. Author: Dongliang Ge, PhD. Whitlock, M. C. Combining p...At Du...

3

SNPExpress

http://igm.cumc.columbia.edu/SNPExpress/index.php

Duke Institute for Genome Sciences and Policy. Center for Human Genome Variation. SNPExpress on the news]. SNPExpress is a database and its user interface that we developed to permit interrogation of the effects of common SNPs on exon and transcript level expression, in two different human tissues: brain and PBMC ( Peripheral Blood Mononuclear Cell ). In addition to the pre-calculated database (released with the SNPExpress software), the SNPExpress software tool also enables one to perform :. One selecte...

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Enter the terms you wish to search for. Enter the terms you wish to search for. Institute of Genomic Medicine. Core Services and Resources. Institute of Genomic Medicine. As the hub of research and innovation in genomic medicine at Columbia, IGM is paving the way for a future of patient-centered, individualized medicine in which genetic sequencing is a standard of care. Kidney and Liver Diseases. Institute for Genomic Medicine. Columbia University Medical Center. Hammer Health Sciences, 1408.

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igm.cumc.columbia.edu

IGM

ATAV (Analysis Tool for Annotated Variants) is a statistical toolset that is designed to detect complex disease-associated rare genetic variants by performing association analysis on annotated variants derived from whole-genome or whole-exome sequencing data. ERDS is designed for detection of copy number variants (CNVs) on human genomes from next generation sequence data, utilizing information from read depth of short reads and SNV heterozygosity. MetaP performs a meta-analysis and combines the statistic...

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