c4tm.org
Links - The Center for Translational Medicine | The Center for Translational Medicine
http://c4tm.org/links
Research & News. Links - The Center for Translational Medicine. The Institute for Translational Medicine and Therapeutics (ITMAT). Http:/ www.itmat.upenn.edu/. Bethesda Hyperbaric Oxygen Therapy. Http:/ www.bethesdahbot.com/. Reimers Systems. http:/ www.reimerssystems.com/. Science, Translational Medicine. Http:/ stm.sciencemag.org/. The Center for Translational Medicine. Arlington, VA 22207. New Federal Research Subsidizing Pharma. IEDs, Alzheimer’s, and National Defense. Agent Orange De Ja Vu.
med.upenn.edu
Pharm || University of Pennsylvania
http://www.med.upenn.edu/pharm
Department of Systems Pharmacology and Translational Therapeutics. Environmental Health Sciences (EHS). Department of Systems Pharmacology and Translational Therapeutics Overview. Pharmacology at Penn addresses all of these issues in an exciting, collegial and interactive environment. To learn more. Visit our welcome page ». Assistant/Associate Professor of Systems Pharmacology and Translational Therapeutics. Find E-Journals and E-Books. In e-resource title only. 8226; Keywords (anywhere). Heart Research...
med.upenn.edu
Daniel J. Powell Jr. | Members | Institute for Translational Medicine and Therapeutics | Perelman School of Medicine at the University of Pennsylvania
http://www.med.upenn.edu/apps/faculty/index.php/g5455356/p8186734
Ensp; Members and Collaboration. Ensp; Daniel J. Powell Jr. About Education and Training. Master of Regulatory Affairs. Masters in Regulatory Science. Masters in Translational Research. Certificate in Translational Research. Introduction to Clinical Research. Funding for Educational Programs. CTSA KL2 Mentored Career Development and ITMAT Scholarship Programs. ITMAT Research Training Scholarships. About the Research Toolkit. Circa Database of Oscillating Genes. Daniel J. Powell Jr. 3400 Civic Center Blvd.
depressiongenetics.med.upenn.edu
University of Pennsylvania || Perelman School of Medicine || Centers
http://depressiongenetics.med.upenn.edu/centers.shtml
Perelman School of Medicine. Free-standing, Interdisciplinary Centers and Institutes. Center for Clinical Epidemiology and Biostatistics. Center for Digestive, Liver, and Pancreatic Medicine. Center for Orphan Disease Research and Therapy. Center for Public Health Initiatives. Center for Research on Reproduction and Women's Health. Center for Sleep and Circadian Neurobiology. Institute for Diabetes, Obesity and Metabolism. Institute for Environmental Medicine. Institute for Medicine and Engineering.
defsci.blogspot.com
def science { }: August 2013
http://defsci.blogspot.com/2013_08_01_archive.html
Bioinformatics on the cloud. Sunday, August 4, 2013. Monday August 5th I start at Amazon Web Services as a Sr. Solutions Architect. While I have some idea of what the role entails, which is generally to help people use cloud computing for solving scientific and high-performance computing problems, I am under no illusion that I will know what it will actually be like in practice. Or what career paths just opened up for me. I am super excited and am bouncing-off-the-walls excited for tomorrow to come.
defsci.blogspot.com
def science { }: December 2007
http://defsci.blogspot.com/2007_12_01_archive.html
Bioinformatics on the cloud. Tuesday, December 11, 2007. Ask not for what you think you need. Yet, the town folk keep insisting "we need LIMS, please give.". LIMS are probably the only thing that potentially fits the bill for experimental data management, so that's what benchers ask for, when most likely a digital asset management application would suffice. Heck, even all those bit torrent sites can potentially do the job that researchers need. Are you in a regulated environment? Use of the LIMS? Promote...
defsci.blogspot.com
def science { }: January 2010
http://defsci.blogspot.com/2010_01_01_archive.html
Bioinformatics on the cloud. Friday, January 22, 2010. Ruby AWS = Easy Map-Reduce. As read lengths grow, we have found that the current crop of short read aligners don't seem to do very well with RNA-seq data. In a recent experiment we were only able to map about 40% of the reads using Bowtie. Was able to map an additional 45% percent of the reads, but was orders of magnitude slower than Bowtie (3 hours vs 8 days.). I decided to try out my hand at using Amazon Web Services. That script takes the public u...
defsci.blogspot.com
def science { }: Getting Promise Pegasus to actually email you in case of drive failure
http://defsci.blogspot.com/2012/01/getting-promise-pegasus-to-actually.html
Bioinformatics on the cloud. Wednesday, January 18, 2012. Getting Promise Pegasus to actually email you in case of drive failure. Has posted an excellent update to these scripts that take advantage of launchd to run these processes. See this gist. A nice feature of the system, though, is that the included Promise Utility GUI that ships with the array also installs quite a full featured command line utility. For instance, you can get a quick report of the drives in the array by issuing the following:.
defsci.blogspot.com
def science { }: February 2011
http://defsci.blogspot.com/2011_02_01_archive.html
Bioinformatics on the cloud. Monday, February 21, 2011. Compile BLAT on x86 64 Ubuntu 10.04. Recently I needed to compile BLAT for x86 64 on Ubuntu 10.04 server. The BLAT pre-compiled binaries for linux are 32-bit. Here is how you do it:. Remove the -Werror compiler flag to treat warnings as errors. Mkdir -p /bin/x86 6. Step (3) above requires editing the. File, line 17 goes from. HG WARN ERR = -DJK WARN -Wall -Werror. HG WARN ERR = -DJK WARN -Wall. Make places the executables into /bin/x86 64.
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