jamesrco.github.io

Jamie Collins | Home

Personal website of Jamie Collins, Ph.D. student in chemical oceanography at the Massachusetts Institute of Technology (MIT) and Woods Hole Oceanographic Institution (WHOI). Research interests include lipid geochemistry, lipidomics, sources and effects of oxidative stress in marine microorganisms, mechanisms through which organic matter is oxidized in the surface ocean, and development of new instruments for making observations in the marine environment.

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Jamie Collins | Home | jamesrco.github.io Reviews

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Personal website of Jamie Collins, Ph.D. student in chemical oceanography at the Massachusetts Institute of Technology (MIT) and Woods Hole Oceanographic Institution (WHOI). Research interests include lipid geochemistry, lipidomics, sources and effects of oxidative stress in marine microorganisms, mechanisms through which organic matter is oxidized in the surface ocean, and development of new instruments for making observations in the marine environment.

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2 brief bio

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Jamie Collins | Home | jamesrco.github.io Reviews

https://jamesrco.github.io

Personal website of Jamie Collins, Ph.D. student in chemical oceanography at the Massachusetts Institute of Technology (MIT) and Woods Hole Oceanographic Institution (WHOI). Research interests include lipid geochemistry, lipidomics, sources and effects of oxidative stress in marine microorganisms, mechanisms through which organic matter is oxidized in the surface ocean, and development of new instruments for making observations in the marine environment.

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jamesrco.github.io

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Jamie Collins | Miscellany

http://jamesrco.github.io/stuff

A loosely-organized jumble of things I like, things in which I am interested, things in which I feel others might be interested, things I’ve found on the Internet, and slides for talks I’ve given. Some modest advice about open-source software development. Slides prepared for a January 27, 2017, workshop organized by WHOI’s Ocean Informatics initiative. Includes some advice on development of R packages for submission to Bioconductor. Based on lessons learned from development of the LOBSTAHS.

2

Jamie Collins | Data & Code

http://jamesrco.github.io/data_code

Scientists should have free and open access to code, software, and data. In the case of my published research. I have endeavored to provide all data and code necessary to replicate the data analysis and figures/tables on which I based my scientific conclusions. I am guided and inspired by the open access, documentation, and provenance standards of the National Science Foundation. Project and the Geoscience Papers of the Future. And, with apologies to those without the $2,150 for a copy. Page Once there, ...

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Jamie Collins | Publications

http://jamesrco.github.io/publications

To download, view abstract, obtain data and code. Collins, J. R. B R Edwards, Helen F. Fredricks, and B. A. S. Van Mooy. LOBSTAHS: An adduct-based lipidomics strategy for discovery and identification of oxidative stress biomarkers. Analytical Chemistry. 7154-7162; doi:10.1021/acs.analchem.6b01260. LOBSTAHS putatively identified 1,969 unique parent compounds in 21,869 features that survived the multi-stage screening process. While P. tricornutum. Raquo; Article: PDF. Raquo; Software: "LOBSTAHS" R package.

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Jamie Collins | Brief Bio

http://jamesrco.github.io/bio

I am an oceanographer and marine geochemist at the Woods Hole Oceanographic Institution. My research has taken me to Antarctica (twice; check out my blog, here. And throughout the world’s oceans on various research vessels. Computational approaches for data discovery. Prior to beginning my Ph.D. studies in the MIT/WHOI Joint Program. I earned a master’s degree in environmental science from the Yale School of Forestry and Environmental Studies. In my research there, I worked with Dr. Peter Raymond. In sum...

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Jamie Collins | CV

http://jamesrco.github.io/cv

View: PDF of full CV. PhD, MIT/WHOI Joint Program in Oceanography/Applied Ocean Science and Engineering. Chemical Oceanography, February 2017. Advisor: Dr. Ben Van Mooy. Thesis: "The remineralization of marine organic matter by diverse biological and abiotic processes". Raquo; Access to: PDF of thesis. To compile from scratch. MESc, Marine Biogeochemistry, Yale School of Forestry and Environmental Studies. Advisor: Dr. Pete Raymond. BA, Political Science, Yale College (with distinction). 2009 Post-9/11 G...

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SCOPE: Students

http://scope.soest.hawaii.edu/students.html

Simons Collaboration on Ocean Processes and Ecology. SCOPE Ops. Staff. University of Southern California. University of Southern California. University of Hawai'i, Manoa. Technion - Israel Institute of Technology. Drorsh@campus.technion.ac.il. University of Hawai'i, Manoa. Georgia Institute of Technology. Simons Collaboration on Ocean Processes and Ecology.

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Jamie Collins | Home

I am a marine geochemist, oceanographer, and (as of January 2017) recent recipient of a Ph.D. in chemical oceanography from the Woods Hole Oceanographic Institution. WHOI) and Massachusetts Institute of Technology. MIT) In April, I will be moving west to begin a Moore/Sloan and Washington Research Foundation Innovation Postdoctoral Fellowship in Data Science at the University of Washington. Please use the links on the navigation bar above to explore my site, or proceed directly to my GitHub profile.

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