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DSSR-Jmol Web Interface

The DSSR-Jmol integration makes salient features of DSSR readily accessible, either via the Java-based Jmol application itself, or its HTML5-based equivalent, JSmol. This simple web interface is based on the 'dssr.htm' demo file distributed with jsmol.zip.

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DSSR-Jmol Web Interface | jmol.x3dna.org Reviews
<META>
DESCRIPTION
The DSSR-Jmol integration makes salient features of DSSR readily accessible, either via the Java-based Jmol application itself, or its HTML5-based equivalent, JSmol. This simple web interface is based on the 'dssr.htm' demo file distributed with jsmol.zip.
<META>
KEYWORDS
1 RNA Structure
2 Molecular Visualization
3 Structural Bioinformatics
4 Base-pairs
5 hairpin
6 bulge
7 internal
8 and junction loops
9 pseudoknots
10 RNA motifs
CONTENT
Page content here
KEYWORDS ON
PAGE
selected features,to be filled,command history,wc' },for non,watson crick pairs,dssr q&as,dssr manual,jmol users mailing list,jmol dssr doc,jmol
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Apache/2.4.10 (Ubuntu)
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DSSR-Jmol Web Interface | jmol.x3dna.org Reviews

https://jmol.x3dna.org

The DSSR-Jmol integration makes salient features of DSSR readily accessible, either via the Java-based Jmol application itself, or its HTML5-based equivalent, JSmol. This simple web interface is based on the 'dssr.htm' demo file distributed with jsmol.zip.

LINKS TO THIS WEBSITE

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/highlights/pauling-triplex-model-of-nucleic-acids-is-available-in-3dna

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Highlights of recent developments of 3DNA/DSSR. Rsaquo; Paulings triplex model of nucleic acids is available in 3DNA. 3DNA C source code is available. The DSSR - block-color option. Integrating DSSR into Jmol and PyMOL. Characterization of base-pair geometry. DSSR base blocks in PyMOL, interactively. Details on the simple base-pair parameters. Fitting of base reference frame. In a r...

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/highlights/the-dssr-block-color-option

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Highlights of recent developments of 3DNA/DSSR. Paulings triplex model of nucleic acids is available in 3DNA. 3DNA C source code is available. Rsaquo; The DSSR - block-color option. Integrating DSSR into Jmol and PyMOL. Characterization of base-pair geometry. DSSR base blocks in PyMOL, interactively. Details on the simple base-pair parameters. Fitting of base reference frame. Script...

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/articles/cartoon-block-representation-of-quadruplex-duplex-interface

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. PyMOL wrapper to 3DNA fiber models. Rsaquo; Cartoon-block representation of quadruplex-duplex interface. 3DNA Forum is spam free. Ask reproducible questions, publicly. Simple parameters for non-Watson-Crick base pairs. Quality control of DSSR (3DNA) source code. Metallo-base pairs can be identified by DSSR. Middot; Weird PDB entries. Middot; 3DNA fiber models. I quickly ran DSSR.

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/articles/3dna-fiber-models

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Rsaquo; 3DNA fiber models. PyMOL wrapper to 3DNA fiber models. Cartoon-block representation of quadruplex-duplex interface. 3DNA Forum is spam free. Ask reproducible questions, publicly. Simple parameters for non-Watson-Crick base pairs. Quality control of DSSR (3DNA) source code. Metallo-base pairs can be identified by DSSR. Middot; Weird PDB entries. Middot; 3DNA fiber models.

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/highlights/highlights-of-recent-developments-of-3dna-dssr

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Rsaquo; Highlights of recent developments of 3DNA/DSSR. Paulings triplex model of nucleic acids is available in 3DNA. 3DNA C source code is available. The DSSR - block-color option. Integrating DSSR into Jmol and PyMOL. Characterization of base-pair geometry. DSSR base blocks in PyMOL, interactively. Details on the simple base-pair parameters. Fitting of base reference frame. Subdir...

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/highlights/dssr-base-blocks-in-pymol-interactively

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Highlights of recent developments of 3DNA/DSSR. Paulings triplex model of nucleic acids is available in 3DNA. 3DNA C source code is available. The DSSR - block-color option. Integrating DSSR into Jmol and PyMOL. Characterization of base-pair geometry. Rsaquo; DSSR base blocks in PyMOL, interactively. Details on the simple base-pair parameters. Fitting of base reference frame. 8217;s...

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/articles/outside-links

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. PyMOL wrapper to 3DNA fiber models. Cartoon-block representation of quadruplex-duplex interface. 3DNA Forum is spam free. Ask reproducible questions, publicly. Simple parameters for non-Watson-Crick base pairs. Quality control of DSSR (3DNA) source code. Metallo-base pairs can be identified by DSSR. Middot; Weird PDB entries. Middot; Highlights of recent developments of 3DNA/DSSR.

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/highlights/schematic-diagrams-of-base-pair-parameters

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Highlights of recent developments of 3DNA/DSSR. Paulings triplex model of nucleic acids is available in 3DNA. 3DNA C source code is available. The DSSR - block-color option. Integrating DSSR into Jmol and PyMOL. Characterization of base-pair geometry. DSSR base blocks in PyMOL, interactively. Details on the simple base-pair parameters. Fitting of base reference frame. Pictorial defi...

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/highlights/3dna-c-source-code-is-available

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Highlights of recent developments of 3DNA/DSSR. Paulings triplex model of nucleic acids is available in 3DNA. Rsaquo; 3DNA C source code is available. The DSSR - block-color option. Integrating DSSR into Jmol and PyMOL. Characterization of base-pair geometry. DSSR base blocks in PyMOL, interactively. Details on the simple base-pair parameters. Fitting of base reference frame. Compil...

home.x3dna.org home.x3dna.org

3DNA Homepage -- Nucleic Acid Structures

http://home.x3dna.org/articles/pymol-wrapper-to-3dna-fiber-models

3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Rsaquo; PyMOL wrapper to 3DNA fiber models. Cartoon-block representation of quadruplex-duplex interface. 3DNA Forum is spam free. Ask reproducible questions, publicly. Simple parameters for non-Watson-Crick base pairs. Quality control of DSSR (3DNA) source code. Metallo-base pairs can be identified by DSSR. Middot; Weird PDB entries. Middot; 3DNA fiber models. Gives the following de...

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DSSR-Jmol Web Interface

DSSR-Enhanced Visualization of Nucleic Acid Structures in Jmol. Robert M. Hanson and Xiang-Jun Lu. To gain full access to Jmol scripting, and see the. The commands issued above are echoed in the text box. Other Jmol scripts can also be input there (see examples). Right-click (or Ctrl-click on Mac. In the image window to see the contextual menu. SELECT @{ M.dssr.nts.select("WHERE is modified")}. For modified nucleotides, or. SELECT @{ M.dssr.pairs.select("WHERE name!

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