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BaRC: Bioinformatics and Research Computing

How to get software.

http://jura.wi.mit.edu/

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PAGE TITLE
BaRC: Bioinformatics and Research Computing | jura.wi.mit.edu Reviews
<META>
DESCRIPTION
How to get software.
<META>
KEYWORDS
1 group members
2 enter site
3 bioinfo basics
4 education
5 short course notes
6 hot topics notes
7 how to's sops
8 bioinfo tools
9 developed at whitehead
10 barc tools
CONTENT
Page content here
KEYWORDS ON
PAGE
group members,enter site,bioinfo basics,education,short course notes,hot topics notes,how to's sops,bioinfo tools,developed at whitehead,barc tools,sirna design,primer3,targetscan,databases,entrez gene,graphics,graphics home,software,illustrator,photoshop
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BaRC: Bioinformatics and Research Computing | jura.wi.mit.edu Reviews

https://jura.wi.mit.edu

How to get software.

INTERNAL PAGES

jura.wi.mit.edu jura.wi.mit.edu
1

Power Point

http://jura.wi.mit.edu/bio/graphics/powerpoint/powerpoint.htm

Please do not use PowerPoint as a drawing program. It may be tempting because it's simple and familiar. But its simplicity can get you into trouble. If you want to print a poster, put a figure into a grant, or just make a high quality print for a paper, PowerPoint is much more limited than other drawing programs such as Illustrator or InDesign. You may lose resolution, color and even object placement during the process. The simplicity of the program makes it very inflexible. What to do then?

2

Photoshop

http://jura.wi.mit.edu/bio/graphics/photoshop/photoshop.htm

Photoshop is a wonderful but enormous program. To meet your needs, we have directions on these web pages. Please browse the options at the left, and if you are looking for something specific, use the search button above. For additional help, try http:/ www.youtube.com. And type in a question such as "How do I make a tube in Photoshop", "How can I adjust the image size in Photoshop", or whatever you would like to learn more about.

3

Entrez Gene Database: Home page

http://jura.wi.mit.edu/entrez_gene

Creating a local MySQL version of NCBI's Entrez Gene database. Is NCBI's repository for gene-specific information. Access to this information either through the Entrez Gene website or by flat files via NCBI's ftp site can be time consuming and limiting in regards to the number of and what questions you can ask about the data. A better solution for intense data mining is to create a relational database. Including wget, tar and gzip. Basic installation; no special modules needed. Script to load parsed files.

4

Sequence Enrichment Visualization Tool

http://jura.wi.mit.edu/cgi-bin/bio/draw_enrichment.pl

Upload your Sequence File. Comments, problems, or questions?

5

The Reddien Lab

http://jura.wi.mit.edu/reddien

MIT Department of Biology. Cambridge, MA 02142. Welcome to the Reddien Lab. We are located in the Whitehead Institute for Biomedical Research and are part of the Biology Department of the Massachusetts Institute of Technology. The ability of certain animals to regenerate new limbs, tails, or in some cases even heads has puzzled biologists for centuries. We aim to identify and understand the molecular and cellular mechanisms that control regeneration. Your browser does not support HTML2.0 Canvas.

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LINKS TO THIS WEBSITE

encorbio.com encorbio.com

ON-LINE DATA | EnCor Biotechnology

http://encorbio.com/on-line-data

GALLERY OF IHC IMAGES. Baylor COM Search Launcher. 8211; Translate, Blast, all kinds of useful stuff. 8211; Links to Programs at the Whitehead Institute. 8211; Find protein and nucleic acid sequences related to yours. 8211; Multiple alignments of protein or nucleic acid sequence. 8211; We have our own set of useful programs and protocols on-line. 8211; Lots of online Swiss programs. 8211; Useful web based free email access site. 8211; Molecular Biology and Bioinformatics Compendium of useful programs.

sirna.wi.mit.edu sirna.wi.mit.edu

WI siRNA Selection Program

http://sirna.wi.mit.edu/reference.php

Please Reference the siRNA Selection Program. If you have found the siRNA Selection Program useful in your experiments, please reference it in the appropriate manuscripts and abstracts. We encourage you to reference the siRNA Selection Program as follows:. Bingbing Yuan, Robert Latek, Markus Hossbach, Thomas Tuschl, and Fran Lewitter. SiRNA Selection Server: an automated siRNA oligonucleotide prediction server. Nucl Acids. Res. 2004 32:W130-W134. Comments and suggestions to:.

barcwiki.wi.mit.edu barcwiki.wi.mit.edu

BaRC Wiki

http://barcwiki.wi.mit.edu/wiki

Welcome to the Whitehead Institute BaRC wiki. Visit our Standard Operating Procedures. For guidance on different types of analyses. Last modified on 01/30/13 12:13:58. Download in other formats:. Powered by Trac 1.0.

barcwiki.wi.mit.edu barcwiki.wi.mit.edu

SOPs – BaRC Wiki

http://barcwiki.wi.mit.edu/wiki/SOPs

These are "how-to's" detailing the methods that BaRC uses and finds to work effectively. Email BaRC if you have any questions about how or why to perform what is described on these pages. Quality control and preprocessing of short reads (fastq files). SAM/BAM summarizing and processing. Using ChIP-Seq to identify and/or quantify bound regions (peaks). Using RNA-Seq to quantify gene levels and assay for differential expression. Using RNA-Seq to assemble or annotate transcripts. Variant calling and analysis.

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Jura

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BaRC: Bioinformatics and Research Computing

How to get software.

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Blog de jura01 - jura01 - Skyrock.com

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JURA IL LIBRO

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