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Karchin Lab Johns Hopkins University

We develop computational models to interpret and predict the impact of individual variation in the genome, transcriptome, and proteome. Our tools are designed for high throughput analysis of large data sets. Computational analysis of genomic and clinical data to aid medical decision making. PhD student Collin Tokheim's work on cancer driver prediction. Featured in the Baltimore Sun. View Current Research ». About the Karchin Lab. We develop computational models to interpret and predict the impact of indi...

http://www.karchinlab.org/

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Karchin Lab Johns Hopkins University | karchinlab.org Reviews
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We develop computational models to interpret and predict the impact of individual variation in the genome, transcriptome, and proteome. Our tools are designed for high throughput analysis of large data sets. Computational analysis of genomic and clinical data to aid medical decision making. PhD student Collin Tokheim's work on cancer driver prediction. Featured in the Baltimore Sun. View Current Research ». About the Karchin Lab. We develop computational models to interpret and predict the impact of indi...
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Karchin Lab Johns Hopkins University | karchinlab.org Reviews

https://karchinlab.org

We develop computational models to interpret and predict the impact of individual variation in the genome, transcriptome, and proteome. Our tools are designed for high throughput analysis of large data sets. Computational analysis of genomic and clinical data to aid medical decision making. PhD student Collin Tokheim's work on cancer driver prediction. Featured in the Baltimore Sun. View Current Research ». About the Karchin Lab. We develop computational models to interpret and predict the impact of indi...

INTERNAL PAGES

karchinlab.org karchinlab.org
1

Karchin Lab Johns Hopkins University

http://www.karchinlab.org/people.html

The William R. Brody Faculty Scholar, Johns Hopkins University. Institute for Computational Medicine, Department of Biomedical Engineering, Department of Oncology. About the Karchin Lab. Dave Masica, Ph.D. Department of Biomedical Engineering. Institute for Computational Medicine. Department of Biomedical Engineering. Institute for Computational Medicine. Department of Biomedical Engineering. Institute for Computational Medicine. Department of Biomedical Engineering. Institute for Computational Medicine.

2

Karchin Lab Johns Hopkins University

http://www.karchinlab.org/datasets.html

Most requested datasets from our publications. If the dataset you are interested in is not listed here, contact Rachel Karchin karchin at jhu dot edu. Functional Impact of missense variants in BRCA1 predicted by supervised learning. PLoS Comput Biol. 2007 Feb 16;3(2):e26. Extreme phenotype yeast mutants in TP53 from Kato et al. (PNAS 2003). BRCA1 BRCT domain variants with transactivation assay labels. BRCA1 BRCT domain variants of undetermined significance in Breast Information Core (BIC) database.

3

Karchin Lab Johns Hopkins University CHASM

http://www.karchinlab.org/apps/appChasm.html

CHASM @ Karchin lab. CHASM (Cancer-specific High-throughput Annotation of Somatic Mutations). Is a machine learning method that predicts the functional significance of somatic missense mutations observed in the genomes of cancer cells, allowing mutations to be prioritized in subsequent functional studies, based on the probability that they give the cells a selective survival advantage. Current release is CHASM 3.0. Dependency: SNVBox 3.0 last updated on 05/01/2014. Documentation for the user. Carter H, S...

4

Karchin Lab Johns Hopkins University

http://www.karchinlab.org/teaching.html

Dr Karchin's Teaching Schedule. Foundations of Computational Biology and Bioinformatics II. Foundations of Computational Biology and Bioinformatics II. BME 580.688, CS 600.688. Foundations of Computational Biology and Bioinformatics II. BME 580.488/580.688, CS 600.488/600.688. Foundations of Computational Biology and Bioinformatics II. BME 580.488/580.688, CS 600.488/600.688. Foundations of Computational Biology and Bioinformatics II. BME 580.488/580.688, CS 600.488/600.688.

5

Biomedical Engineering Computational Biology Graduate Program at Johns Hopkins

http://www.karchinlab.org/bme-compbio-jhu

Check out computational biology labs available through our graduate programs. About Computational Biology in JHU Biomedical Engineering. Visit Some Hopkins Researchers in Computational Biology and Computational Medicine. Johns Hopkins Department of Biomedical Engineering.

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graylab.jhu.edu graylab.jhu.edu

Lab Members in Gray Lab

http://graylab.jhu.edu/members.html

Welcome to the Gray Lab. Jeffrey J. Gray, Ph.D. Email: jgray at jhu dot edu. Jason W. Labonte, Ph.D. PhD, Chemistry, Johns Hopkins University. BS, Biochemistry, Grove City College. Julia Koehler Leman, Ph.D. PhD, Chemical and Physical Biology, Vanderbilt University. MS, Physics, Leipzig, Germany. Email: julia.koehler[at]jhu.edu. Brian Weitzner, Ph.D. 2015. PhD, Chemical and Biomolecular Engineering, Johns Hopkins University. BS, Chemical Engineering, Cornell. Email: brian.weitzner at jhu dot edu. BS, Bio...

biocharliecastro.blogspot.com biocharliecastro.blogspot.com

C.I.B. Barbara McClintock Research & Development: 2009-06-14

http://biocharliecastro.blogspot.com/2009_06_14_archive.html

CIB Barbara McClintock Research and Development. Blog especializado en la investigacion biológica y el desarrollo de las ciencias de la vida. Dirigido a todas las mentes libres, creativas, abiertas al conocimiento y la divulgación científica. amantes de la naturaleza y la biodiversidad. SELECCIÓN DE OLÍMPICOS DE CIENCIAS BIOLÓGICAS XI OLIMPIADAS PERUANAS DE BIOLOGIA OPB 2016. FORMANDO TALENTOS EN CIENCIAS BIOLOGICAS. EL FASCINANTE MUNDO DE LAS CIENCIAS DE LA VIDA. NUESTRO DISCÍPULO SUBCAMPEÓN IBEROAMERIC...

biocharliecastro.blogspot.com biocharliecastro.blogspot.com

C.I.B. Barbara McClintock Research & Development: 2009-08-09

http://biocharliecastro.blogspot.com/2009_08_09_archive.html

CIB Barbara McClintock Research and Development. Blog especializado en la investigacion biológica y el desarrollo de las ciencias de la vida. Dirigido a todas las mentes libres, creativas, abiertas al conocimiento y la divulgación científica. amantes de la naturaleza y la biodiversidad. SELECCIÓN DE OLÍMPICOS DE CIENCIAS BIOLÓGICAS XI OLIMPIADAS PERUANAS DE BIOLOGIA OPB 2016. FORMANDO TALENTOS EN CIENCIAS BIOLOGICAS. EL FASCINANTE MUNDO DE LAS CIENCIAS DE LA VIDA. NUESTRO DISCÍPULO SUBCAMPEÓN IBEROAMERIC...

biocharliecastro.blogspot.com biocharliecastro.blogspot.com

C.I.B. Barbara McClintock Research & Development: Cierre de la 7° Olimpiada Iberoamericana de Biología en la UNRC María ...

http://biocharliecastro.blogspot.com/2015/05/cierre-de-la-7-olimpiada-iberoamericana.html

CIB Barbara McClintock Research and Development. Blog especializado en la investigacion biológica y el desarrollo de las ciencias de la vida. Dirigido a todas las mentes libres, creativas, abiertas al conocimiento y la divulgación científica. amantes de la naturaleza y la biodiversidad. SELECCIÓN DE OLÍMPICOS DE CIENCIAS BIOLÓGICAS XI OLIMPIADAS PERUANAS DE BIOLOGIA OPB 2016. FORMANDO TALENTOS EN CIENCIAS BIOLOGICAS. EL FASCINANTE MUNDO DE LAS CIENCIAS DE LA VIDA. NUESTRO DISCÍPULO SUBCAMPEÓN IBEROAMERIC...

ccb.jhu.edu ccb.jhu.edu

People at CCB

http://ccb.jhu.edu/people.php

Steven L. Salzberg, Ph.D. Professor of Biomedical Engineering, Computer Science, and Biostatistics. Director, Center for Computational Biology. Computational Biology Consulting Core. McKusick-Nathans Institute of Genetic Medicine. Department of Biomedical Engineering. Johns Hopkins University School of Medicine. Dan Arking, Ph.D. McKusick-Nathans Institute of Genetic Medicine. Department of Medicine, Division of Cardiology. Johns Hopkins University School of Medicine. Joel Bader, Ph.D. 97;jbattle. Johns ...

biocharliecastro.blogspot.com biocharliecastro.blogspot.com

C.I.B. Barbara McClintock Research & Development: 2009-05-10

http://biocharliecastro.blogspot.com/2009_05_10_archive.html

CIB Barbara McClintock Research and Development. Blog especializado en la investigacion biológica y el desarrollo de las ciencias de la vida. Dirigido a todas las mentes libres, creativas, abiertas al conocimiento y la divulgación científica. amantes de la naturaleza y la biodiversidad. SELECCIÓN DE OLÍMPICOS DE CIENCIAS BIOLÓGICAS XI OLIMPIADAS PERUANAS DE BIOLOGIA OPB 2016. FORMANDO TALENTOS EN CIENCIAS BIOLOGICAS. EL FASCINANTE MUNDO DE LAS CIENCIAS DE LA VIDA. NUESTRO DISCÍPULO SUBCAMPEÓN IBEROAMERIC...

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Karchin Lab Johns Hopkins University

We develop computational models to interpret and predict the impact of individual variation in the genome, transcriptome, and proteome. Our tools are designed for high throughput analysis of large data sets. Computational analysis of genomic and clinical data to aid medical decision making. PhD student Collin Tokheim's work on cancer driver prediction. Featured in the Baltimore Sun. View Current Research ». About the Karchin Lab. We develop computational models to interpret and predict the impact of indi...

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We develop computational models to interpret and predict the impact of individual variation in the genome, transcriptome, and proteome. Our tools are designed for high throughput analysis of large data sets. Computational analysis of genomic and clinical data to aid medical decision making. PhD student Collin Tokheim's work on cancer driver prediction. Featured in the Baltimore Sun. View Current Research ». About the Karchin Lab. We develop computational models to interpret and predict the impact of indi...

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