kbroman.org
Karl BromanKarl Broman is Professor in Biostatistics and Medical Informatics at University of Wisconsin - Madison; research in statistical genetics
http://www.kbroman.org/
Karl Broman is Professor in Biostatistics and Medical Informatics at University of Wisconsin - Madison; research in statistical genetics
http://www.kbroman.org/
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University of Wisconsin-Madison
Karl Broman
425 H●●●●● Mall
Ma●●on , WI, 53706
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University of Wisconsin-Madison
Karl Broman
425 H●●●●● Mall
Ma●●on , WI, 53706
US
View this contact
University of Wisconsin-Madison
Karl Broman
425 H●●●●● Mall
Ma●●on , WI, 53706
US
View this contact
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Karl Broman | kbroman.org Reviews
https://kbroman.org
Karl Broman is Professor in Biostatistics and Medical Informatics at University of Wisconsin - Madison; research in statistical genetics
kbroman.org
Karl Broman
http://kbroman.org/morefigs.html
about
http://kbroman.org/pages/about.html
Karl Broman is Professor in the Department of Biostatistics and Medical Informatics. At the University of Wisconsin Madison; research in statistical genetics; developer of R/qtl. Karl received a BS in mathematics. In 1991, from the University of Wisconsin Milwaukee, and a PhD in statistics. In 1997, from the University of California, Berkeley; his PhD advisor was Terry Speed. He was a postdoctoral fellow with James Weber. At the Marshfield Clinic Research Foundation. Where he is now Professor.
teaching
http://kbroman.org/pages/teaching.html
Tools for reproducible research. BMI 826-003; Spring, 2015). Resources and further reading. Statistical methods for molecular biology (Stat 877), with many others. QTL mapping part 1 (pdf). QTL mapping part 2 (pdf). QTL mapping part 2 (pdf). Identifying sample mix-ups (pdf). Homework: [ assignment (pdf). Nonparametric linkage analysis in humans. QTL mapping in humans. Madison, WI (23-24 August 2016). GitHub repository: web site. Madison, WI (1-2 June 2016). GitHub repository: web site. At The Jackson Lab.
tutorials
http://kbroman.org/pages/tutorials.html
Initial steps toward reproducible research. Organizing data in spreadsheets. Knitr in a knutshell. Making a simple website with GitHub Pages. Re-educating people who learned R before it was cool. Not really a tutorial, but there are some useful links here]. Very old; I now recommend ruby. Not really a tutorial, but it includes a list of C programming books]. Top ten worst graphs.
software
http://kbroman.org/pages/software.html
Package with tools for analyzing QTL experiments. To receive announcements about updates to R/qtl, join the Google group, R/qtl announcements. To participate in discussion about the use of R/qtl, join the Google group, R/qtl discussion. A reimplementation of R/qtl. To better handle high-dimensional data and complex cross designs. (Early in development.). Based interactive graphics for QTL experiments. It is built on the d3panels. Library (written in CoffeeScript. Various examples of D3. Package for the f...
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rOpenSci Community
https://www.ropensci.org/community
ROpenSci is entirely a community driven effort. The project originally came together from conversations between like-minded researchers and continues to expand as more people contribute tools, expertise, and research ideas. We are now a fast growing global community of researchers, students, software developers, and various others working towards improving the world of science. We welcome you. To join us and help improve tools and practices available to researchers. How to join our community. If have an ...
Rmd to docx collaboration superpowers!
http://www.graphdoctor.com/archives/867
Visual rhetoric / graph design / R. Rmd to docx collaboration superpowers! July 18, 2015. Introduction: who, why, and how? Who this post is for. This post is for RStudio users who want to use R Markdown (Rmd) scripts to create Word (docx) documents and would like to improve their control of Word styles and document design. I assume the reader has RStudio and MSWord installed but otherwise I try not to skip any details. Why we need Rmd to docx. But R Markdown (v2) has given me collaboration superpowers!
First steps towards reproducible research
http://www.graphdoctor.com/archives/595
Visual rhetoric / graph design / R. First steps towards reproducible research. May 10, 2015. Credibility in computational science. Scientific credibility, especially in computation, turns largely on the success or failure of attempts to reproduce findings. Reproducibility has become a topic of discussion in many disciplines because, as Roger Peng says, “for every ‘X’ we now have ‘Computational X'” (Peng 2013). Kenneth Reinhart and Carmen Rogoff. Anil Potti, formerly of Duke University. We obtain comments...
Readings on graph design
http://www.graphdoctor.com/archives/154
Visual rhetoric / graph design / R. Readings on graph design. January 16, 2015. Workshop attendees have asked what readings I recommend on graph design. If you were to read just one book on creating effective graphs, I recommend. Creating more effective graphs. Chart House, 2013. C Kostelnick and M. Hassett. Shaping information: The rhetoric of visual conventions. Southern Illinois Univ. Press, 2003. Pages 473 482, 1998. Warranting repeated readings are the well-known works of Edward Tufte. As Kostel...
Consult
http://www.graphdoctor.com/consult
Visual rhetoric / graph design / R. I’m a part-time con. Sultant and workshop leader in data displays and visual rhetoric, working mainly within the engineering education community. Typically, I work with a client to establish data management protocols and draft preliminary visuals. We discuss what stories emerge and redesign the visuals to better tell those stories. The cycle repeats until our findings are ready to report, present, or publish. R graphics for the absolute beginner. Creating More Effectiv...
About
http://www.graphdoctor.com/sample-page
Visual rhetoric / graph design / R. Within five minutes of meeting you, I’ll have mentioned I’m a Californian, a songwriter, and a guitar player. I am a graduate of California State University, Northridge (1991), and the University of Washington (1993, 1995). Since 2000, I have taught in the Mechanical Engineering Department at Rose-Hulman Institute of Technology. Besides data visualization, I’m also interested in communication and ethics in engineering generally (co-author of the. C) 2016 Richard Layton.
Fixing one graph at a time
http://www.graphdoctor.com/archives/610
Visual rhetoric / graph design / R. Fixing one graph at a time. July 20, 2015. In August 2007,. Published a bar graph that illustrates how design decisions made to attract a reader’s eye can also distort and conceal meaning. While the distortions were surely unintentional, the integrity of the story in the data was compromised nevertheless. Graph as originally shown in Science. From (Fortenberry et al. 2007). Reprinted with permission from AAAS. Of retention rates seems to increase over time because the ...
Using Rmd to write about using Rmd
http://www.graphdoctor.com/archives/978
Visual rhetoric / graph design / R. Using Rmd to write about using Rmd. July 23, 2015. In reproducing Jenny Bryan’s article. On including verbatim R chunks in R Markdown (Rmd) scripts, I initially forgot John Gruber’s markdown basics. For verbatim code output:. To specify an entire block of pre-formatted code, indent every line of the block by 4 spaces or 1 tab. Just like with code spans, &, , and characters will be escaped automatically. Here I modify just one of them, the suggestion from Karl Broman.
Archive
http://www.graphdoctor.com/archives
Visual rhetoric / graph design / R. Continuing experimenting with the reach package. November 5, 2016. Continuing my experimenting with the reach package (by Christoph Schmidt) for R, I’ve begun developing tools for using R Markdown to create course materials that include MATLAB syntax and output. My goal is …. Improving the reproducibilty of MATLAB computing with R, RStudio, and reach. November 2, 2015. Why run MATLAB from R? Using Rmd to write about using Rmd. July 23, 2015. Fixing one graph at a time.
R to docx: Comparing R markdown v2 to ReporteRs
http://www.graphdoctor.com/archives/3
Visual rhetoric / graph design / R. R to docx: Comparing R markdown v2 to ReporteRs. July 10, 2014. Like many R users, I collaborate with colleagues who prefer docx and pptx file formats. My usual work flow has been to use. Rnw files) to produce a PDF document that I send ’round to my colleagues for review and comment. While. Work is reproducible, PDFs are not the most convenient format for iterative review and comment. 2014 I learned of two methods to create docx files dynamically:. Requires that I use.
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Karl Broman
The stupidest thing... | Statistics, genetics, programming, academics
The stupidest thing…. Statistics, genetics, programming, academics. I’m starting a new blog site at. I’m abandoning this WordPress site as it is; I don’t want to fuss with trying to move things. I thought maybe I was being paranoid. An odd thing happened to me on twitter today. Had tweeted a statement. From system president Ray Cross. Concerning Trump’s executive order. Banning refugees and immigrants from 7 countries. Cross’s statement is close to the most empty, useless possible such statement. A quick...
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K. Bromberg – Author
K Bromberg – Author. Everyday Heroes – Standalone Novels. Control: An Everyday Heroes Novella. Slow Burn is a steaming-hot, bittersweet romance that stays with you long after you finished the book. -. 1 NYTimes Bestselling author Jennifer L. Armentrout. Grant Malone is not the reason I moved back to Sunnyville at least that’s what I tell myself. It all started with the invitation. To my ex-fiance’s new wedding. I should have ignored it. But I didn’t. I replied. Driven (Driven, #1). Fueled (Driven, #2).
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