kirstenhofmockel.org

Research Program | Kirsten Hofmockel

What are the mechanisms structuring soil microbial communities? How do functional groups of microorganisms respond to changing environmental conditions (e.g. elevated atmospheric N deposition, warming, altered precipitation, restoration)? How does variation in specific microbial communities relate to decomposition and N cycling? Molecular interactions of the plant-soil-microbe continuum of bioenergy ecosystems. Nutrient Network Collaborative Research. Co-PIs Sarah Hobbie and Melanie Mayes.

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Research Program | Kirsten Hofmockel | kirstenhofmockel.org Reviews

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What are the mechanisms structuring soil microbial communities? How do functional groups of microorganisms respond to changing environmental conditions (e.g. elevated atmospheric N deposition, warming, altered precipitation, restoration)? How does variation in specific microbial communities relate to decomposition and N cycling? Molecular interactions of the plant-soil-microbe continuum of bioenergy ecosystems. Nutrient Network Collaborative Research. Co-PIs Sarah Hobbie and Melanie Mayes.

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Research Program | Kirsten Hofmockel | kirstenhofmockel.org Reviews

https://kirstenhofmockel.org

What are the mechanisms structuring soil microbial communities? How do functional groups of microorganisms respond to changing environmental conditions (e.g. elevated atmospheric N deposition, warming, altered precipitation, restoration)? How does variation in specific microbial communities relate to decomposition and N cycling? Molecular interactions of the plant-soil-microbe continuum of bioenergy ecosystems. Nutrient Network Collaborative Research. Co-PIs Sarah Hobbie and Melanie Mayes.

INTERNAL PAGES

kirstenhofmockel.org

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Protocols | Kirsten Hofmockel

http://www.kirstenhofmockel.org/protocol

Field sampling of greenhouse gases. Persulfate Oxidation for Total Nitrogen. Inorganic N analysis using microplate format. Microbalance: Direct Input to Excel.

2

SPRUCE | Kirsten Hofmockel

http://www.kirstenhofmockel.org/content/spruce

Can Microbial Ecology and Mycorrhizal Functioning Inform Climate Change Models? Co-PI Erik Hobbie, University of New Hampshire.

3

Publications | Kirsten Hofmockel

http://www.kirstenhofmockel.org/pubs

2014 40. Composition and Distribution of Core Carbohydrate-Active Microbial Genes in Biofuel Soils. 2014 Genomic Science Contractor-Grantee Meeting XII. :68. Find It Via OpenURL! 2014 Demonstrating microbial co-occurrence pattern analyses within and between ecosystems. Frontiers in microbiology. 5. Find It Via OpenURL! 2014 Fungal carbon sources in a pine forest: evidence from a sup 13. C-labeled global change experiment. Fungal Ecology. 10:91-100. Find It Via OpenURL! Find It Via OpenURL! 2013 Reaction-...

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LINKS TO THIS WEBSITE

adina.github.io

Bottlenecks for metagenomic analysis

http://adina.github.io/2013/01/25/bottlenecks-for-metagenomic-analysis

Bottlenecks for metagenomic analysis. I just came back from a week at Iowa State University with Kirsten Hofmockel. And her fantastic group. Team Hofmockel is interested in studying soil microbial communities in bioenergy crop systems (something I know a little bit about from Jim Tiedje. And C Titus Brown). We’re combining a nice experiment that involves lots of useful biogeochemistry measurements with deep metagenomic sequencing (oh yeah). Throw in the support of the DOE KBase. In a recent great read.

adina.github.io

Thoughts on soil metagenomic analysis with IPython and KBase

http://adina.github.io/2013/03/08/speedy-science

Thoughts on soil metagenomic analysis with IPython and KBase. One of my first tasks as a new postdoc at my new gig was to be the bridge for a soil metagenomics project between Kirsten Hofmockel’s. Sequencing generation team at Iowa State University and the tool development MG-RAST. Team at ANL. Given two months to extract, sequence, and analyze the complex diversity of soil aggregates, my role was to integrate KBase tools and to enable Team Hofmockel to deliver results at the DOE Grantee’s meeting. And t...

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Research Program | Kirsten Hofmockel

What are the mechanisms structuring soil microbial communities? How do functional groups of microorganisms respond to changing environmental conditions (e.g. elevated atmospheric N deposition, warming, altered precipitation, restoration)? How does variation in specific microbial communities relate to decomposition and N cycling? Molecular interactions of the plant-soil-microbe continuum of bioenergy ecosystems. Nutrient Network Collaborative Research. Co-PIs Sarah Hobbie and Melanie Mayes.

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