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Arun Konagurthu -- Laboratory of Computational BiologyHome page of Konagurthu Laboratory of Computational Biology
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Arun Konagurthu -- Laboratory of Computational Biology | lcb.infotech.monash.edu.au Reviews
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I-value: Alignment Comparison using I-value (information content)
http://lcb.infotech.monash.edu.au/I-value
Information measure of structural alignment quality. JH Collier, L.Allison, am Lesk, M. Garcia de la Banda and A.S. Konagurthu. A new statistical framework to assess structural alignment quality using information compression. Bioinformatics (2014) 30 (17): i512-i518. The service was shutdown on 31-July-2016. The encoding models supporting the. Value framework were completely overhauled and reimplemented from the ground up during the development of our new structural alignment program, MMLigner.
superpose3Dlib: A C++ library for least-squares superposition of 3D vector sets
http://lcb.infotech.monash.edu.au/superpose3D
A C library for least-squares superposition of 3D vector sets. A S Konagurthu, P. Kasarapu, L. Allison, J. H. Collier, A. M. Lesk, On sufficient statistics of least-squares superposition of vector sets. Journal of Computational Biology 20(6): 487-497 (2015) (selected RECOMB 2014 papers special issue. This reviewed journal version supersedes the version published in the proceedings of the conference) [preprint]. For bug reports, web page errors, or questions.
MMLigner: STatistical inference of protein structural alignments using information and compression
http://lcb.infotech.monash.edu.au/mmligner
Statistical inference of protein structural alignments using information and compression. J H Collier, L. Allison, A. M. Lesk, P. J. Stuckey, M. Garcia de la Banda & A. S. Konagurthu, Statistical inference of protein structural alignments using information and compression, Bioinformatics (2017; in press) [DOI link]. Download or try online. Try online with MMLigner Web. OS/X 10.11.4. Mmligner 1.0.1. Mmligner 1.0.1. Mmligner 1.0.1. Instructions for running MMLigner. Example command line inputs:. Mmligner 1...
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Arun Konagurthu -- Laboratory of Computational Biology
Laboratory of Computational Biology. Maria Garcia de la Banda. Ramanan Subramanian (Research Fellow). Peter Stuckey (Univ.Melb.). Arthur M. Lesk (Penn State). David Abramson (Univ.Qld.). Arun Konagurthu (Group lead). James Collier (PhD student; completed Sept 2016). PhD student; completed Apr 2016). Some programs and web utilities we developed for structural analyses. A command line program to align and superpose multiple three-dimensional structures of proteins. A web server and a program to rapidly scr...
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