Lepbase is the Lepidopteran genome database, providing an ensembl genome browser. And more as a set of resources for moth and butterfly genome research. Follow the links below to go directly to our main tools and resources. If you use lepbase in your research, please cite our preprint: Lepbase: the Lepidopteran genome database. Http:/ dx.doi.org/10.1101/056994. For the latest news and updates, follow @lepbase.
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lepbase.org | release 3 | lepbase.org Reviews
https://lepbase.org
Lepbase is the Lepidopteran genome database, providing an ensembl genome browser. And more as a set of resources for moth and butterfly genome research. Follow the links below to go directly to our main tools and resources. If you use lepbase in your research, please cite our preprint: Lepbase: the Lepidopteran genome database. Http:/ dx.doi.org/10.1101/056994. For the latest news and updates, follow @lepbase.
BLAST Lepbase
Drop query sequence file here. One file at a time please. Too big a file. Can only do less than 10 MB. Only FASTA files please. Detected: mixed nucleotide and protein sequences. We can't handle that. Please try one sequence at a time. Calycopis cecrops v 1.1 cds. Chilo suppressalis CsuOGS 1.0 cds. Manduca sexta Msex 1.0 cds. Plutella xylostella DBM FJ v 1.1 cds. Bicyclus anynana v 1.2 cds. Lerema accius v 1.1 cds. Papilio glaucus v 1.1 cds. Papilio machaon Pap ma 1.0 cds. Papilio polytes Ppol 1.0 cds.
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LepBase - Lepidoptera genome browser
For easy access to commonly used genomes, drag from the bottom list to the top one · Save. Amyelois transitella v1 (. Bicyclus anynana v1.2 (. Bicyclus anynana nBa.0.1 (. Bombyx mori ASM15162v1 (. Calycopis cecrops v1.1 (. Chilo suppressalis CsuOGS1.0 (. Danaus plexippus v3 (. Heliconius erato v1 (. Heliconius melpomene Hmel2 (. Lerema accius v1.1 (. Manduca sexta Msex 1.0 (. Operophtera brumata v1 (. Papilio glaucus v1.1 (. Papilio machaon Pap ma 1.0 (. Papilio polytes Ppol 1.0 (. Eueides tales helico2 (.
lepbase.org
analysis | lepbase.org
http://lepbase.org/category/analysis
Links to results and descriptions of single-species and comparative analyses undertaken by Lepbase.
blog | lepbase.org
http://lepbase.org/category/blog
Added by Richard Challis on March 6th 2017. Have been developed to provide a simple and scalable way to deploy an Ensembl. Genome browser and associated tools for clades or communities of non-model organisms. We have made the technology and analysis pipelines underpinning Lepbase available in an easy to install/use collection of Docker. Containers, designed to run together to provide an Ensembl browser, an h5ai. Downloads server and a SequenceServer. To find out more. Following our presentation at PAG XXV.
PAG XXV | lepbase.org
http://lepbase.org/pag-xxv
Added by Richard Challis on January 14th 2017. Richard Challis presented our newly containerised easy Ensembl setup with EasyMirror and EasyImport at PAG XXV. The Plant & Animal Genomes conference, in San Diego on 14th January 2017. A full version of this presentation. With notes is also available. Our code and containers are all available on the Lepbase github. Repositories with some draft documentation at readme.io.
About | lepbase.org
http://lepbase.org/about
Lepbase: the Lepidopteran genome database. Http:/ dx.doi.org/10.1101/056994.
help | lepbase.org
http://lepbase.org/category/help
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Papilio glaucus - LepBase - Lepidoptera genome browser
http://ensembl.lepbase.org/Papilio_glaucus_v1x1/Info/Index
Papilio glaucus (v1.1). Papilio glaucus v1.1. Data Source Grishin Lab UT Southwestern Medical Center. From Wikipedia) The Eastern tiger swallowtail (Papilio glaucus) is a species of swallowtail butterfly native to eastern North America. It is one of the most familiar butterflies in the eastern United States, where it is common in many different habitats. Picture credit: Wikimedia commons. Search for genes and regions of interest using BLAST. Example search terms: pgl2313.5.
Chilo suppressalis - LepBase - Lepidoptera genome browser
http://ensembl.lepbase.org/Chilo_suppressalis_csuogs1/Info/Index
Chilo suppressalis (CsuOGS1.0). Chilo suppressalis CsuOGS1.0. Data Source Department of Entomology, College of Plant Protection, Nanjing Agricultural University. The rice striped stem borer, Chilo suppressalis, is a major pest of rice crops in most rice producing countries. The data presented here have been made available by ChiloDB[1], a genomic and transcriptomic database for Chilo suppressalis. Search for genes and regions of interest using BLAST. Example search terms: CSUOGS100006-TA.
Danaus plexippus - LepBase - Lepidoptera genome browser
http://ensembl.lepbase.org/Danaus_plexippus_v3/Info/Index
Data Source Reppert Lab. Picture credit (Creative Commons BY 2.0): Thomas Bresson 2010. Search for genes and regions of interest using BLAST. Or use the box in the the top right to search for genes, scaffolds and annotations. Example search terms: DPOGS200009. Alternate assembly available: Danaus plexippus DanPle 1.0. Assembly stats plots are described at github.com/rjchallis/assembly-stats. The genome assembly was obtained from MonarchBase. OGS20 gene models were imported from MonarchBase.
Limnephilus lunatus - LepBase - Lepidoptera genome browser
http://ensembl.lepbase.org/Limnephilus_lunatus_v1/Info/Index
From Caddisfly genome project. Picture credit: Wikimedia commons. Search for genes and regions of interest using BLAST. Or use the box in the the top right to search for genes, scaffolds and annotations. Example search terms: LLUN010179. Assembly stats plots are described at github.com/rjchallis/assembly-stats. Downloaded from Caddisfly genome project. Downloaded from Caddisfly genome project. BCM-HGSC conditions of use. Any redistribution of the data should carry this notice. Codon usage plots are descr...
Lerema accius - LepBase - Lepidoptera genome browser
http://ensembl.lepbase.org/Lerema_accius_v1x1/Info/Index
Lerema accius (v1.1). Lerema accius v1.1. Data Source Grishin Lab UT Southwestern Medical Center. From Wikipedia) Lerema accius, the clouded skipper, is a butterfly of the Hesperiidae family. It is found in the United States from Georgia west to Texas, south to Florida, and south through Mexico and Central America to Venezuela and Colombia. The wingspan is 32 45 mm. Adults are on wing year round in Florida and southern Texas. Picture credit: Butterflies of America. Example search terms: lac1000.3. Skippe...
Heliconius melpomene melpomene - LepBase - Lepidoptera genome browser
http://ensembl.lepbase.org/Heliconius_melpomene/Info/Index
Heliconius melpomene melpomene (Hmel1). Heliconius melpomene melpomene Hmel1. Data Source Heliconius Genome Consortium. Has large long wings with a red stripe down each forewing. It is poisonous, and has a geographical distribution from Central to South America. It is the first of the Heliconius butterflies to have its genome sequenced. Picture credit: Mauricio Linares, via Chris Jiggins. Search for genes and regions of interest using BLAST. Example search terms: Antp. LepBase release v4 - February 2017 ...
Bicyclus anynana - LepBase - Lepidoptera genome browser
http://ensembl.lepbase.org/Bicyclus_anynana_nba01/Info/Index
Bicyclus anynana (nBa.0.1). Bicyclus anynana nBa.0.1. Data Source Bicyclus Consortium. The squinting bush brown butterfly,. Feed on several species of grass. It is a model organism for the study of the development, plasticity and evolution of butterfly wing patterns [2,3,4]. In addition,. Is one of the only insect species to exhibit seasonal polyphenism. Is an important system through which to study the evolution of phenotypic plasticity. 2010 BMC Biol. 8:111-124. Example search terms: Peptidoglycan.
Melitaea cinxia - LepBase - Lepidoptera genome browser
http://ensembl.lepbase.org/Melitaea_cinxia/Info/Index
Melitaea cinxia (MelCinx1.0). Melitaea cinxia MelCinx1.0. Data Source Glanville fritillary butterfly genome project. The Glanville Fritillary, is a member of the Nymphalidae, the largest butterfly family. Named after an 17th century English lepidopterist, Lady Eleanor Glanville. Its range in the UK. Is now restricted to the Isle of Wight, and although distributed widely across Europe, North Africa and Asia, populations are reportedly in decline. The spatially separated. Example search terms: MCINX009814.
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Welcome to the Lepidoptera Barcode of Life campaign website. Lepidoptera ï butterflies and moths ï are the second-most diverse order of insects with about 160,000 known species and likely as many still awaiting description. As a major target for analysis since the earliest developments of DNA barcoding, Lepidoptera have strongly contributed to demonstration of the efficiency of the method and its applicability to highly diverse lineages (see Publications. The International Barcode of Life. Project (iBOL)...
lepbase.org | release 3
Lepbase is the Lepidopteran genome database, providing an ensembl genome browser. And more as a set of resources for moth and butterfly genome research. Follow the links below to go directly to our main tools and resources. If you use lepbase in your research, please cite our preprint: Lepbase: the Lepidopteran genome database. Http:/ dx.doi.org/10.1101/056994. For the latest news and updates, follow @lepbase.
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