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GSoC 2014 [Leandro Watanabe] - JSBML

GSoC 2014 [Leandro Watanabe] - JSBML. Wednesday, January 21, 2015. Update in the spec. There has been some changes in the Arrays specification recently. Namely, the operations on vectors have been removed. The reason is because it has been decided that all the math in the document should be evaluated to a scalar. This requirement eliminates the need of computing vector operations since:. 1,2,3} {1,2,3})[0] = {1,2,3}[0] {1,2,3}[0]. Thursday, August 21, 2014. Flattening: I implemented a routine that flatte...

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GSoC 2014 [Leandro Watanabe] - JSBML | lhwatanabe.blogspot.com Reviews

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GSoC 2014 [Leandro Watanabe] - JSBML. Wednesday, January 21, 2015. Update in the spec. There has been some changes in the Arrays specification recently. Namely, the operations on vectors have been removed. The reason is because it has been decided that all the math in the document should be evaluated to a scalar. This requirement eliminates the need of computing vector operations since:. 1,2,3} {1,2,3})[0] = {1,2,3}[0] {1,2,3}[0]. Thursday, August 21, 2014. Flattening: I implemented a routine that flatte...

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GSoC 2014 [Leandro Watanabe] - JSBML | lhwatanabe.blogspot.com Reviews

https://lhwatanabe.blogspot.com

GSoC 2014 [Leandro Watanabe] - JSBML. Wednesday, January 21, 2015. Update in the spec. There has been some changes in the Arrays specification recently. Namely, the operations on vectors have been removed. The reason is because it has been decided that all the math in the document should be evaluated to a scalar. This requirement eliminates the need of computing vector operations since:. 1,2,3} {1,2,3})[0] = {1,2,3}[0] {1,2,3}[0]. Thursday, August 21, 2014. Flattening: I implemented a routine that flatte...

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GSoC 2014 [Leandro Watanabe] - JSBML: June 2014

http://lhwatanabe.blogspot.com/2014_06_01_archive.html

GSoC 2014 [Leandro Watanabe] - JSBML. Monday, June 30, 2014. Weekly Log: June 23 - June 29. As of revision 20642, I have done validation for the following rules:. 10206, 1207, 1208, 10209, 10210, 20103, 20104, 20107, 20108, 20111, 20112, 20114, 20202, 20204, 20205, 20302, 20305, 20307, 20308. Wednesday, June 25, 2014. Here are the slides for the midterm evaluation presentation. Monday, June 23, 2014. Weekly Log: June 16 - June 22. So far, these are the things being validated:. For listOfDimensions and li...

2

GSoC 2014 [Leandro Watanabe] - JSBML: July 2014

http://lhwatanabe.blogspot.com/2014_07_01_archive.html

GSoC 2014 [Leandro Watanabe] - JSBML. Monday, July 28, 2014. Weekly Log: July 21 - July 27. The flattening routine should in theory work for all SBML core constructs. I have been testing the flattening function this past week. I integrated the flattening routine in a tool called iBioSim. I give a initial assignment to Y as shown below. Y is given a vector as initial assignment. This can be translated as. Y[1] = 1 and so on. Finally, I specify the attributes for the rule:. X[9-d0] = Y[d0] where d0 is the ...

3

GSoC 2014 [Leandro Watanabe] - JSBML: Project Wrap-up

http://lhwatanabe.blogspot.com/2014/08/project-wrap-up.html

GSoC 2014 [Leandro Watanabe] - JSBML. Thursday, August 21, 2014. The Google Summer of Code program is over. I had an amazing time working on this project. I really enjoyed working in this project and I am thankful for this opportunity. I am happy with my results and, hopefully, I can continue to contribute to the community. In summary, this summer I implemented:. The extension is simple, but flattening and validation can be quite tricky since arrays have many implications on the math. This model has 1000...

4

GSoC 2014 [Leandro Watanabe] - JSBML: Update in the spec

http://lhwatanabe.blogspot.com/2015/01/update-in-spec.html

GSoC 2014 [Leandro Watanabe] - JSBML. Wednesday, January 21, 2015. Update in the spec. There has been some changes in the Arrays specification recently. Namely, the operations on vectors have been removed. The reason is because it has been decided that all the math in the document should be evaluated to a scalar. This requirement eliminates the need of computing vector operations since:. 1,2,3} {1,2,3})[0] = {1,2,3}[0] {1,2,3}[0]. Subscribe to: Post Comments (Atom). View my complete profile.

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GSoC 2014 [Leandro Watanabe] - JSBML: August 2014

http://lhwatanabe.blogspot.com/2014_08_01_archive.html

GSoC 2014 [Leandro Watanabe] - JSBML. Thursday, August 21, 2014. The Google Summer of Code program is over. I had an amazing time working on this project. I really enjoyed working in this project and I am thankful for this opportunity. I am happy with my results and, hopefully, I can continue to contribute to the community. In summary, this summer I implemented:. The extension is simple, but flattening and validation can be quite tricky since arrays have many implications on the math. This model has 1000...

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GSoC 2014 [Leandro Watanabe] - JSBML

GSoC 2014 [Leandro Watanabe] - JSBML. Wednesday, January 21, 2015. Update in the spec. There has been some changes in the Arrays specification recently. Namely, the operations on vectors have been removed. The reason is because it has been decided that all the math in the document should be evaluated to a scalar. This requirement eliminates the need of computing vector operations since:. 1,2,3} {1,2,3})[0] = {1,2,3}[0] {1,2,3}[0]. Thursday, August 21, 2014. Flattening: I implemented a routine that flatte...

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