lrg-sequence.org

Home | Locus Reference Genomic

Skip to Main Content Area. Eg LRG 1, COL1A1, NM 000088.3. View the list of existing LRGs. And the status of LRGs. Download LRG records in XML and FASTA format from the [FTP site]. See all the downloads. If no LRG record exists for your gene of interest [ View all LRGs. You can request one to be created for you. You may submit information about variants to. And obtain an accession number for each variant. The results will be returned to you as outlined in this document. View the list of LRG web services.

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Skip to Main Content Area. Eg LRG 1, COL1A1, NM 000088.3. View the list of existing LRGs. And the status of LRGs. Download LRG records in XML and FASTA format from the [FTP site]. See all the downloads. If no LRG record exists for your gene of interest [ View all LRGs. You can request one to be created for you. You may submit information about variants to. And obtain an accession number for each variant. The results will be returned to you as outlined in this document. View the list of LRG web services.

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Home | Locus Reference Genomic | lrg-sequence.org Reviews

https://lrg-sequence.org

Skip to Main Content Area. Eg LRG 1, COL1A1, NM 000088.3. View the list of existing LRGs. And the status of LRGs. Download LRG records in XML and FASTA format from the [FTP site]. See all the downloads. If no LRG record exists for your gene of interest [ View all LRGs. You can request one to be created for you. You may submit information about variants to. And obtain an accession number for each variant. The results will be returned to you as outlined in this document. View the list of LRG web services.

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dev.lrg-sequence.org

Locus Reference Genomic – LRG sequences provide a stable genomic DNA framework for reporting variants with a permanent ID and core content that never changes.

Stable reference sequences for reporting variants. A Locus Reference Genomic (LRG) record contains stable reference sequences for reporting sequence variants with clinical implications. LRG are manually curated, have permanent identifiers and core content that never changes. Read about. LRG records in several formats (XML, FASTA, BED). Access programmatically through web services. Check the progress of pending LRG records undergoing curation. Why use LRGs for variant reporting? Integrated into the Ensembl.

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lrg-sequence.org

1

Web Service | Locus Reference Genomic

http://www.lrg-sequence.org/web-service

Skip to Main Content Area. Eg LRG 1, COL1A1, NM 000088.3. It is possible to access some of the LRG information programatically via the XML-RPC protocol. This enables methods to be called on a remote server and the result to be returned to the client over HTTP. Parameters and return values are encoded using XML. For detailed instructions on how to communicate via the XML-RPC protocol. The methods exposed by the service can be viewed by calling system.listMethods. With the name of the method as parameter.

2

Submit variants | Locus Reference Genomic

http://www.lrg-sequence.org/submit-variants

Skip to Main Content Area. Eg LRG 1, COL1A1, NM 000088.3. Consistent with the goals of the LRG collaboration, we offer the opportunity to submit information about variants to dbSNP. As appropriate, and obtain an accession number for each variant. The results will be returned to you as outlined in the instructions. The minimum information you need to report for each mutation is:. The mutation description in HGVS nomenclature, preferably using a LRG record as reference sequence. OMIM allelic variant ID.

3

LRG News | Locus Reference Genomic

http://www.lrg-sequence.org/news

Skip to Main Content Area. Eg LRG 1, COL1A1, NM 000088.3. All LRG records have now been corrected to contain the LRG creation date and not the RefSeqGene creation date. The rest of the record remains unchanged. We apologize for any incovenience this might have caused. 500 Public LRG Milestone Achieved. Update of LRG records. LRGs in the UCSC Genome Browser. LRG regions and transcripts are now available to view in the UCSC Genome Browser. The LRG Regions track is in the Mapping and Sequencing group, w...

4

List LRGs | Locus Reference Genomic

http://www.lrg-sequence.org/LRG

Skip to Main Content Area. Eg LRG 1, COL1A1, NM 000088.3. Site maintained by the External Services team at EMBL-EBI.

5

About the LRG collaboration | Locus Reference Genomic

http://www.lrg-sequence.org/about

Skip to Main Content Area. Eg LRG 1, COL1A1, NM 000088.3. About the LRG collaboration. In recognition of the need to create universally accepted reference standards for variant reporting, GEN2PHEN ( http:/ www.gen2phen.org. The aim of the project is to create an LRG for every locus with clinical implications. The creation of an LRG involves several steps:. RefSeqs reviewed and RefSeqGene released by NCBI. Pending LRG created by NCBI and EBI. Final review performed by LRG curators at EBI. EBI and NCBI are...

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ncbi.nlm.nih.gov

All Resources - Site Guide - NCBI

https://www.ncbi.nlm.nih.gov/Database

Skip to main content. All Chemicals and Bioassays Resources. BLAST (Basic Local Alignment Search Tool). Sequence Read Archive (SRA). All DNA and RNA Resources. BLAST (Basic Local Alignment Search Tool). Conserved Domain Search Service (CD Search). Vector Alignment Search Tool (VAST). All Data and Software Resources. Conserved Domain Database (CDD). Conserved Domain Search Service (CD Search). Structure (Molecular Modeling Database). Vector Alignment Search Tool (VAST). All Domains and Structures Resources.

u-dna.blogspot.com

DNA World: DNA and RNA Tools

http://u-dna.blogspot.com/2013/12/dna-and-rna-tools.html

This blog is all about DNA, a mysterious genetic material. Enter your search terms. Http:/ u-dna.blogspot.com. Dec 25, 2013. DNA and RNA Tools. BioProject (formerly Genome Project). The BioSample database contains descriptions of biological source materials used in experimental assays. A collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. Database of Expressed Sequence Tags (dbEST). Includes single nucleotide variation...

genetics-db.neu.edu.tr

Useful Links | NEU-GMD Beta

http://genetics-db.neu.edu.tr/links

Links to other important databases. Human Gene Mutation Database (HGMD). Human Genome Variation Society (HGVS). Leiden Open Variation Database (LOVD). Locus Referece Genomic (LRG). National Human Genome Research Institute. Office of Rare Diseases (National Institutes of Health). Centre for Arab genomic studies. OrphaNet (information on rare diseases and orphan drugs). Pasteur Institute of Iran. Public Health Genetics Unit (The Cambridge Genetics Knowledge Park). Disease and Mutation Databases.

al-mulla.org

al-mulla Molecular Laboratory

http://www.al-mulla.org/databases.html

One topic at a time. He complete guide for available proteomic and genomic databases. Locus specific Database 1. Locus specific Database 2. Locus specific Database 3. Ligand protein binding database (BioLip. Prediction of protein function from 3D structure (ProFunc). Catalogue of Somatic Mutation in Cancer. Encyclopedia of DNA Elements. Geuvadis RNA sequencing project of 1000 Genomes samples. Mouse Genome Informatics (MGI). Singel Nucleotide Polymorphism (SNP) Databases. The ALlele FREquency Database.

be-md.ncbi.nlm.nih.gov

DNA & RNA - Site Guide - NCBI

http://www.be-md.ncbi.nlm.nih.gov/guide/dna-rna

Skip to main content. All Chemicals and Bioassays Resources. BLAST (Basic Local Alignment Search Tool). Sequence Read Archive (SRA). All DNA and RNA Resources. BLAST (Basic Local Alignment Search Tool). Conserved Domain Search Service (CD Search). Vector Alignment Search Tool (VAST). All Data and Software Resources. Conserved Domain Database (CDD). Conserved Domain Search Service (CD Search). Structure (Molecular Modeling Database). Vector Alignment Search Tool (VAST). All Domains and Structures Resources.

be-md.ncbi.nlm.nih.gov

Genes & Expression - Site Guide - NCBI

http://www.be-md.ncbi.nlm.nih.gov/guide/genes-expression

Skip to main content. All Chemicals and Bioassays Resources. BLAST (Basic Local Alignment Search Tool). Sequence Read Archive (SRA). All DNA and RNA Resources. BLAST (Basic Local Alignment Search Tool). Conserved Domain Search Service (CD Search). Vector Alignment Search Tool (VAST). All Data and Software Resources. Conserved Domain Database (CDD). Conserved Domain Search Service (CD Search). Structure (Molecular Modeling Database). Vector Alignment Search Tool (VAST). All Domains and Structures Resources.

ncbi.nlm.nih.gov

All Resources - Site Guide - NCBI

http://www.ncbi.nlm.nih.gov/guide/all

Skip to main content. All Chemicals and Bioassays Resources. BLAST (Basic Local Alignment Search Tool). Sequence Read Archive (SRA). All DNA and RNA Resources. BLAST (Basic Local Alignment Search Tool). Conserved Domain Search Service (CD Search). Vector Alignment Search Tool (VAST). All Data and Software Resources. Conserved Domain Database (CDD). Conserved Domain Search Service (CD Search). Structure (Molecular Modeling Database). Vector Alignment Search Tool (VAST). All Domains and Structures Resources.

preview.ncbi.nlm.nih.gov

All Resources - Site Guide - NCBI

http://preview.ncbi.nlm.nih.gov/guide/all

Skip to main content. All Chemicals and Bioassays Resources. BLAST (Basic Local Alignment Search Tool). Sequence Read Archive (SRA). All DNA and RNA Resources. BLAST (Basic Local Alignment Search Tool). Conserved Domain Search Service (CD Search). Vector Alignment Search Tool (VAST). All Data and Software Resources. Conserved Domain Database (CDD). Conserved Domain Search Service (CD Search). Structure (Molecular Modeling Database). Vector Alignment Search Tool (VAST). All Domains and Structures Resources.

preview.ncbi.nlm.nih.gov

DNA & RNA - Site Guide - NCBI

http://preview.ncbi.nlm.nih.gov/guide/dna-rna

Skip to main content. All Chemicals and Bioassays Resources. BLAST (Basic Local Alignment Search Tool). Sequence Read Archive (SRA). All DNA and RNA Resources. BLAST (Basic Local Alignment Search Tool). Conserved Domain Search Service (CD Search). Vector Alignment Search Tool (VAST). All Data and Software Resources. Conserved Domain Database (CDD). Conserved Domain Search Service (CD Search). Structure (Molecular Modeling Database). Vector Alignment Search Tool (VAST). All Domains and Structures Resources.

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Home | Locus Reference Genomic

Skip to Main Content Area. Eg LRG 1, COL1A1, NM 000088.3. View the list of existing LRGs. And the status of LRGs. Download LRG records in XML and FASTA format from the [FTP site]. See all the downloads. If no LRG record exists for your gene of interest [ View all LRGs. You can request one to be created for you. You may submit information about variants to. And obtain an accession number for each variant. The results will be returned to you as outlined in this document. View the list of LRG web services.

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